Results 81 - 100 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33625 | 5' | -66.2 | NC_007605.1 | + | 30822 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30618 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 11011 | 0.72 | 0.196749 |
Target: 5'- uGCGCaaCgCCGGCC-UGCUGGCCGAGCu -3' miRNA: 3'- gCGCG--GgGGCCGGcGCGGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30720 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 132230 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 132605 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 132355 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 131980 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 132105 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 133354 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 132854 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 132979 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 54042 | 0.71 | 0.236143 |
Target: 5'- aGCGCCCggaccUCGGCCGCcUCGGCCucggucAGCa -3' miRNA: 3'- gCGCGGG-----GGCCGGCGcGGUCGGu-----UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 162034 | 0.71 | 0.241508 |
Target: 5'- gGCaGCCgCCGGCCGUacacCCGGCCcuGCa -3' miRNA: 3'- gCG-CGGgGGCCGGCGc---GGUCGGuuCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 133104 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 55756 | 0.71 | 0.246974 |
Target: 5'- gGCGCCUggGGCCGagGCCacaccGGCCAGGCc -3' miRNA: 3'- gCGCGGGggCCGGCg-CGG-----UCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 67987 | 0.71 | 0.252542 |
Target: 5'- -aUGCCCCCGGCCaGCGacaGGCUGAGg -3' miRNA: 3'- gcGCGGGGGCCGG-CGCgg-UCGGUUCg -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 133229 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 132480 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 59122 | 0.71 | 0.246974 |
Target: 5'- cCGCGCacggggccgguuCCCCGGgUGCGCUGGCUuuGCc -3' miRNA: 3'- -GCGCG------------GGGGCCgGCGCGGUCGGuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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