Results 101 - 120 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33625 | 5' | -66.2 | NC_007605.1 | + | 30997 | 0.71 | 0.236143 |
Target: 5'- uGgGCCaCCCGGCCGC-CC--CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 131980 | 0.71 | 0.230878 |
Target: 5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3' miRNA: 3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 109592 | 0.71 | 0.258213 |
Target: 5'- uCGCuGCCCCUGGCC-CGgCGG-CGGGCg -3' miRNA: 3'- -GCG-CGGGGGCCGGcGCgGUCgGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 120995 | 0.71 | 0.236143 |
Target: 5'- uGCGCCCgUGGUgGcCGCCGGCgcAGCa -3' miRNA: 3'- gCGCGGGgGCCGgC-GCGGUCGguUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39723 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 22955 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29093 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 33897 | 0.7 | 0.300203 |
Target: 5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCC-GGCc -3' miRNA: 3'- gCGCGGG-------------GGCCGGCgCGGUCGGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 21924 | 0.7 | 0.288137 |
Target: 5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCg -3' miRNA: 3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 19887 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 16818 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 32162 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 3059 | 0.7 | 0.294439 |
Target: 5'- gCGCGCCCCCcgGGCCccaGUGCUGuGaUCGAGCa -3' miRNA: 3'- -GCGCGGGGG--CCGG---CGCGGU-C-GGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 35231 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 159781 | 0.7 | 0.281941 |
Target: 5'- aGCGCCUCCucgcaGGCCcccCGCaccagGGCCAGGCg -3' miRNA: 3'- gCGCGGGGG-----CCGGc--GCGg----UCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 13749 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38349 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 151088 | 0.7 | 0.300848 |
Target: 5'- aCGCaauuuGCCCCCcugggcGGCCGCaGCCuGCCccucGGCg -3' miRNA: 3'- -GCG-----CGGGGG------CCGGCG-CGGuCGGu---UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 137377 | 0.7 | 0.275851 |
Target: 5'- cCGCcuCCCCCaGCC-CGCCAGCCAc-- -3' miRNA: 3'- -GCGc-GGGGGcCGGcGCGGUCGGUucg -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 26024 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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