Results 61 - 80 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33625 | 5' | -66.2 | NC_007605.1 | + | 30516 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30720 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30822 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 79910 | 0.72 | 0.206025 |
Target: 5'- gCGgGCCCCaaaGUCGCGCCGGacauCCAGGCc -3' miRNA: 3'- -GCgCGGGGgc-CGGCGCGGUC----GGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29191 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29293 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29395 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30618 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28580 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28682 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28886 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28987 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30108 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29803 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29701 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30312 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29497 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 71821 | 0.72 | 0.206025 |
Target: 5'- -aUGCCCCCGGCUccacgGCcCCGGCCAcuGGCc -3' miRNA: 3'- gcGCGGGGGCCGG-----CGcGGUCGGU--UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 99161 | 0.72 | 0.215677 |
Target: 5'- cCGagGCCgCCGGCuccCGCGCCGGUCAGGg -3' miRNA: 3'- -GCg-CGGgGGCCG---GCGCGGUCGGUUCg -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 73315 | 0.72 | 0.215677 |
Target: 5'- -cUGgCCCCGGCaggugGCcugGCCGGCCAAGCa -3' miRNA: 3'- gcGCgGGGGCCGg----CG---CGGUCGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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