miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 73315 0.72 0.215677
Target:  5'- -cUGgCCCCGGCaggugGCcugGCCGGCCAAGCa -3'
miRNA:   3'- gcGCgGGGGCCGg----CG---CGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 20491 0.72 0.219145
Target:  5'- uGCGCCCCCcgugacggagcuggGGCaCGgGCC-GCCGAGg -3'
miRNA:   3'- gCGCGGGGG--------------CCG-GCgCGGuCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 50371 0.72 0.220646
Target:  5'- gGCuGCCCCCgaGGacggGCGCCGGCCGccAGCg -3'
miRNA:   3'- gCG-CGGGGG--CCgg--CGCGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 101165 0.72 0.220646
Target:  5'- uGCGgCCCCGGCgGUagaGUgggguacgCAGCCAGGCg -3'
miRNA:   3'- gCGCgGGGGCCGgCG---CG--------GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 133104 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 133354 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 131980 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 132105 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 132230 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 132355 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 132480 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 133229 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 132979 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 132854 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 132605 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 30997 0.71 0.236143
Target:  5'- uGgGCCaCCCGGCCGC-CC--CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 120995 0.71 0.236143
Target:  5'- uGCGCCCgUGGUgGcCGCCGGCgcAGCa -3'
miRNA:   3'- gCGCGGGgGCCGgC-GCGGUCGguUCG- -5'
33625 5' -66.2 NC_007605.1 + 54042 0.71 0.236143
Target:  5'- aGCGCCCggaccUCGGCCGCcUCGGCCucggucAGCa -3'
miRNA:   3'- gCGCGGG-----GGCCGGCGcGGUCGGu-----UCG- -5'
33625 5' -66.2 NC_007605.1 + 162034 0.71 0.241508
Target:  5'- gGCaGCCgCCGGCCGUacacCCGGCCcuGCa -3'
miRNA:   3'- gCG-CGGgGGCCGGCGc---GGUCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 59122 0.71 0.246974
Target:  5'- cCGCGCacggggccgguuCCCCGGgUGCGCUGGCUuuGCc -3'
miRNA:   3'- -GCGCG------------GGGGCCgGCGCGGUCGGuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.