Results 101 - 120 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33625 | 5' | -66.2 | NC_007605.1 | + | 59122 | 0.71 | 0.246974 |
Target: 5'- cCGCGCacggggccgguuCCCCGGgUGCGCUGGCUuuGCc -3' miRNA: 3'- -GCGCG------------GGGGCCgGCGCGGUCGGuuCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 67987 | 0.71 | 0.252542 |
Target: 5'- -aUGCCCCCGGCCaGCGacaGGCUGAGg -3' miRNA: 3'- gcGCGGGGGCCGG-CGCgg-UCGGUUCg -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 115307 | 0.71 | 0.252542 |
Target: 5'- gGcCGCCCgaaCGGCCGUgGCCAGacaaCAGGCu -3' miRNA: 3'- gC-GCGGGg--GCCGGCG-CGGUCg---GUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 109592 | 0.71 | 0.258213 |
Target: 5'- uCGCuGCCCCUGGCC-CGgCGG-CGGGCg -3' miRNA: 3'- -GCG-CGGGGGCCGGcGCgGUCgGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 41273 | 0.7 | 0.263988 |
Target: 5'- gGUaCCCuuGGUauUGCGCUGGCCGAGCc -3' miRNA: 3'- gCGcGGGggCCG--GCGCGGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 86374 | 0.7 | 0.263988 |
Target: 5'- gGCGCCCCCcgaGGCCucUGCCGGggaaCGGGCg -3' miRNA: 3'- gCGCGGGGG---CCGGc-GCGGUCg---GUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38349 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38474 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38599 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38724 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 110195 | 0.7 | 0.269867 |
Target: 5'- cCGcCGCCCCC-GCCGCGaCGGCUguGGGUg -3' miRNA: 3'- -GC-GCGGGGGcCGGCGCgGUCGG--UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39723 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39598 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39473 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39348 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39223 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39098 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38849 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38973 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 137377 | 0.7 | 0.275851 |
Target: 5'- cCGCcuCCCCCaGCC-CGCCAGCCAc-- -3' miRNA: 3'- -GCGc-GGGGGcCGGcGCGGUCGGUucg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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