miRNA display CGI


Results 121 - 140 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 159781 0.7 0.281941
Target:  5'- aGCGCCUCCucgcaGGCCcccCGCaccagGGCCAGGCg -3'
miRNA:   3'- gCGCGGGGG-----CCGGc--GCGg----UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 29093 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 35231 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 22955 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 21924 0.7 0.288137
Target:  5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCg -3'
miRNA:   3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 26024 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 16818 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 13749 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 19887 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 32162 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 3059 0.7 0.294439
Target:  5'- gCGCGCCCCCcgGGCCccaGUGCUGuGaUCGAGCa -3'
miRNA:   3'- -GCGCGGGGG--CCGG---CGCGGU-C-GGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 33897 0.7 0.300203
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCC-GGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 151088 0.7 0.300848
Target:  5'- aCGCaauuuGCCCCCcugggcGGCCGCaGCCuGCCccucGGCg -3'
miRNA:   3'- -GCG-----CGGGGG------CCGGCG-CGGuCGGu---UCG- -5'
33625 5' -66.2 NC_007605.1 + 10344 0.69 0.306708
Target:  5'- uGCagGCCCCCggggcugGGCUGCGCaagcaGGCCGGGg -3'
miRNA:   3'- gCG--CGGGGG-------CCGGCGCGg----UCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 132741 0.69 0.307365
Target:  5'- aGCGCcaggaaCCCCGGCUGCcCCAGgaCCuGGCg -3'
miRNA:   3'- gCGCG------GGGGCCGGCGcGGUC--GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 131867 0.69 0.307365
Target:  5'- aGCGCcaggaaCCCCGGCUGCcCCAGgaCCuGGCg -3'
miRNA:   3'- gCGCG------GGGGCCGGCGcGGUC--GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 164913 0.69 0.307365
Target:  5'- gGC-CUCCUGuGUgGcCGCCGGCCAGGCu -3'
miRNA:   3'- gCGcGGGGGC-CGgC-GCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 58899 0.69 0.313321
Target:  5'- cCGCGCCCCCucguccaGGaCCuCGuCCAGCUcaGGGCg -3'
miRNA:   3'- -GCGCGGGGG-------CC-GGcGC-GGUCGG--UUCG- -5'
33625 5' -66.2 NC_007605.1 + 62320 0.69 0.313988
Target:  5'- gGCGUCCCaccgGGCCagauaaGUGUCGGCCAccAGCu -3'
miRNA:   3'- gCGCGGGGg---CCGG------CGCGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 127964 0.69 0.313988
Target:  5'- -aUGCCCCC-GCCGCGCaGGUCA-GCa -3'
miRNA:   3'- gcGCGGGGGcCGGCGCGgUCGGUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.