miRNA display CGI


Results 61 - 80 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 141181 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 141283 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 141385 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 141487 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 141589 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 141894 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 142200 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 142098 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 101847 0.66 0.465726
Target:  5'- gGCGCCCUCGGCUccucggccauuccuGUucaccccacGCCGGCCucGGUc -3'
miRNA:   3'- gCGCGGGGGCCGG--------------CG---------CGGUCGGu-UCG- -5'
33625 5' -66.2 NC_007605.1 + 35449 0.66 0.459691
Target:  5'- -aCGUCCCCGGCCuccCGCuCGGgUAAGUg -3'
miRNA:   3'- gcGCGGGGGCCGGc--GCG-GUCgGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 63644 0.66 0.459691
Target:  5'- uGgGCCUgCaGCCGUGCCccGCCGAuGCg -3'
miRNA:   3'- gCgCGGGgGcCGGCGCGGu-CGGUU-CG- -5'
33625 5' -66.2 NC_007605.1 + 169653 0.66 0.459691
Target:  5'- gGCGCCgCCGG--GCG-CAGCCAuGCg -3'
miRNA:   3'- gCGCGGgGGCCggCGCgGUCGGUuCG- -5'
33625 5' -66.2 NC_007605.1 + 47668 0.67 0.451143
Target:  5'- gGCagGCCCCCagcuucugaggcGGCUGUgGCCucuacGCCAGGCu -3'
miRNA:   3'- gCG--CGGGGG------------CCGGCG-CGGu----CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 152893 0.67 0.451143
Target:  5'- aGCGauCCCCCGGuuGggaaucuuCGCCAGCCc--- -3'
miRNA:   3'- gCGC--GGGGGCCggC--------GCGGUCGGuucg -5'
33625 5' -66.2 NC_007605.1 + 131394 0.67 0.451143
Target:  5'- gGCuGCCCCCuggaccccuaGGCCuGUGCCAuggggacccccuGCCAgucGGCg -3'
miRNA:   3'- gCG-CGGGGG----------CCGG-CGCGGU------------CGGU---UCG- -5'
33625 5' -66.2 NC_007605.1 + 39522 0.67 0.450293
Target:  5'- uCGUGCCCCUuuacccugcccagGGgaGC-CCAGCCAccAGCa -3'
miRNA:   3'- -GCGCGGGGG-------------CCggCGcGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 50381 0.67 0.442683
Target:  5'- gGcCGUCCCgGGCCucuacaGCCccuGCCGGGCa -3'
miRNA:   3'- gC-GCGGGGgCCGGcg----CGGu--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 132393 0.67 0.442683
Target:  5'- uCGCcaGCCgCCGGgCGgGCCGGCCu--- -3'
miRNA:   3'- -GCG--CGGgGGCCgGCgCGGUCGGuucg -5'
33625 5' -66.2 NC_007605.1 + 51575 0.67 0.440162
Target:  5'- uCGUGaggCCCCGGCCGCGUUAaaguagaacugcacGUCcGGCa -3'
miRNA:   3'- -GCGCg--GGGGCCGGCGCGGU--------------CGGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 34333 0.67 0.434313
Target:  5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3'
miRNA:   3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.