miRNA display CGI


Results 101 - 120 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 117785 0.67 0.417852
Target:  5'- gGCuCCCCUcgaGGCCGCcCUGGcCCGGGCa -3'
miRNA:   3'- gCGcGGGGG---CCGGCGcGGUC-GGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 9580 0.67 0.417852
Target:  5'- aCGCGgCCCUgcagGGCCGgGUguaCGGCCGgcGGCu -3'
miRNA:   3'- -GCGCgGGGG----CCGGCgCG---GUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 21338 0.67 0.417852
Target:  5'- uGCGCUCUucUGGCCG-GCCgAGCgAAGUg -3'
miRNA:   3'- gCGCGGGG--GCCGGCgCGG-UCGgUUCG- -5'
33625 5' -66.2 NC_007605.1 + 12789 0.67 0.417039
Target:  5'- uGCGCCgggcggaCgCGGUCaGCcCCGGCCAGGCc -3'
miRNA:   3'- gCGCGG-------GgGCCGG-CGcGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 66970 0.67 0.409766
Target:  5'- --gGCCCCCgGGCgGCGCCGaaaCAGGUu -3'
miRNA:   3'- gcgCGGGGG-CCGgCGCGGUcg-GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 65698 0.67 0.409766
Target:  5'- gGaCGCCCgaCGGCacCGCGUCAGCCugaaaauucuuGAGCc -3'
miRNA:   3'- gC-GCGGGg-GCCG--GCGCGGUCGG-----------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 49606 0.67 0.409766
Target:  5'- cCGcCGCCUCCGccGCCGCaGCCgucgauaccgGGUCAGGUg -3'
miRNA:   3'- -GC-GCGGGGGC--CGGCG-CGG----------UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 10782 0.67 0.409766
Target:  5'- cCGCGUcgcaggCCUCGGCCGgGCUgcuGCUggGUg -3'
miRNA:   3'- -GCGCG------GGGGCCGGCgCGGu--CGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 150692 0.67 0.409766
Target:  5'- gGUGCacgaCCCggaGGCUGCGUCucgugacauGGCCAGGCc -3'
miRNA:   3'- gCGCGg---GGG---CCGGCGCGG---------UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 76235 0.67 0.409766
Target:  5'- uCGcCGCCaCCUGGCUucugaccgggguGCuGCCGGCC-GGCg -3'
miRNA:   3'- -GC-GCGG-GGGCCGG------------CG-CGGUCGGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 95356 0.67 0.401778
Target:  5'- cCGCGUUugugggaCUGGaaGCGCCGGCCGgcAGCa -3'
miRNA:   3'- -GCGCGGg------GGCCggCGCGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 168456 0.67 0.401778
Target:  5'- cCGUGgCCCUGGCCG-GCCccauuucuCCGAGCc -3'
miRNA:   3'- -GCGCgGGGGCCGGCgCGGuc------GGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 169899 0.67 0.401778
Target:  5'- gGgGCUCCgGGgUGaC-CCAGCCAAGCg -3'
miRNA:   3'- gCgCGGGGgCCgGC-GcGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 171497 0.67 0.401778
Target:  5'- gGgGCUCCgGGgUGaC-CCAGCCAAGCg -3'
miRNA:   3'- gCgCGGGGgCCgGC-GcGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 170959 0.67 0.401778
Target:  5'- gGgGCUCCgGGgUGaC-CCAGCCAAGCg -3'
miRNA:   3'- gCgCGGGGgCCgGC-GcGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 170437 0.67 0.401778
Target:  5'- gGgGCUCCgGGgUGaC-CCAGCCAAGCg -3'
miRNA:   3'- gCgCGGGGgCCgGC-GcGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 12164 0.68 0.393889
Target:  5'- gGCGCCCUcuCGGaCGCGCUcaAGCgCAAGg -3'
miRNA:   3'- gCGCGGGG--GCCgGCGCGG--UCG-GUUCg -5'
33625 5' -66.2 NC_007605.1 + 86434 0.68 0.393889
Target:  5'- gGCGCCCCCcgaGGCCucUGCCGGggaaCGGGUg -3'
miRNA:   3'- gCGCGGGGG---CCGGc-GCGGUCg---GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 20240 0.68 0.393889
Target:  5'- aCGaGgCCCUGGCCGUGgCCAGguaCGGGCu -3'
miRNA:   3'- -GCgCgGGGGCCGGCGC-GGUCg--GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 71211 0.68 0.393889
Target:  5'- gGgGCCUCUGGCUGCGUUcuuGCCucGCc -3'
miRNA:   3'- gCgCGGGGGCCGGCGCGGu--CGGuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.