Results 41 - 60 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33625 | 5' | -66.2 | NC_007605.1 | + | 21924 | 0.7 | 0.288137 |
Target: 5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCg -3' miRNA: 3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 22057 | 0.67 | 0.434313 |
Target: 5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3' miRNA: 3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 22955 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 23790 | 0.66 | 0.494707 |
Target: 5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3' miRNA: 3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 24457 | 0.68 | 0.355984 |
Target: 5'- aCGCaCCCCgGGCCagGCcaccuuagacCCGGCCAAGCc -3' miRNA: 3'- -GCGcGGGGgCCGG--CGc---------GGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 24690 | 0.77 | 0.09119 |
Target: 5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3' miRNA: 3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 24992 | 0.69 | 0.348718 |
Target: 5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCc -3' miRNA: 3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 25126 | 0.67 | 0.434313 |
Target: 5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3' miRNA: 3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 26024 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 26859 | 0.66 | 0.494707 |
Target: 5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3' miRNA: 3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 27526 | 0.68 | 0.355984 |
Target: 5'- aCGCaCCCCgGGCCagGCcaccuuagacCCGGCCAAGCc -3' miRNA: 3'- -GCGcGGGGgCCGG--CGc---------GGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 27759 | 0.77 | 0.09119 |
Target: 5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3' miRNA: 3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28061 | 0.69 | 0.348718 |
Target: 5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCc -3' miRNA: 3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28195 | 0.67 | 0.434313 |
Target: 5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3' miRNA: 3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28552 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28580 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28654 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28682 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28756 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28784 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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