miRNA display CGI


Results 101 - 120 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 30794 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30822 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30828 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30896 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30924 0.72 0.201341
Target:  5'- aGgGCCggaaccccgaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30997 0.71 0.236143
Target:  5'- uGgGCCaCCCGGCCGC-CC--CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 31130 0.69 0.348718
Target:  5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCc -3'
miRNA:   3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 31264 0.67 0.434313
Target:  5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3'
miRNA:   3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 32162 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 32996 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 33664 0.68 0.355984
Target:  5'- aCGCaCCCCgGGCCagGCcaccuuagacCCGGCCAAGCc -3'
miRNA:   3'- -GCGcGGGGgCCGG--CGc---------GGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 33897 0.7 0.300203
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCC-GGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 34199 0.69 0.348718
Target:  5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCc -3'
miRNA:   3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 34333 0.67 0.434313
Target:  5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3'
miRNA:   3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 35077 0.68 0.386101
Target:  5'- cCGgGUCCCC-GCC-CGCgGGCCcGGCg -3'
miRNA:   3'- -GCgCGGGGGcCGGcGCGgUCGGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 35231 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 35449 0.66 0.459691
Target:  5'- -aCGUCCCCGGCCuccCGCuCGGgUAAGUg -3'
miRNA:   3'- gcGCGGGGGCCGGc--GCG-GUCgGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 36798 0.67 0.426035
Target:  5'- aGgGCCUCUGGCa-CGCCguGGCCcuGAGCa -3'
miRNA:   3'- gCgCGGGGGCCGgcGCGG--UCGG--UUCG- -5'
33625 5' -66.2 NC_007605.1 + 37389 0.66 0.494707
Target:  5'- gGCGCCCggcauaCCaGCUGaCGCCAuGgCAGGCu -3'
miRNA:   3'- gCGCGGG------GGcCGGC-GCGGU-CgGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 37640 0.68 0.378416
Target:  5'- cCGcCGCCCCgGGCaCGUucaGCgCGGCCGucgugGGCa -3'
miRNA:   3'- -GC-GCGGGGgCCG-GCG---CG-GUCGGU-----UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.