miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 159234 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 157869 0.68 0.370834
Target:  5'- gGCGCCCggggguCgGGCUGgGCC-GCCAGGg -3'
miRNA:   3'- gCGCGGG------GgCCGGCgCGGuCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 156165 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 155877 0.68 0.378416
Target:  5'- -cUGCCUCCGGCCuuGCCGuGCCcucuuGGGCa -3'
miRNA:   3'- gcGCGGGGGCCGGcgCGGU-CGG-----UUCG- -5'
33625 5' -66.2 NC_007605.1 + 155714 0.76 0.116726
Target:  5'- aCGCugGCCCCauCGGCCuuGCGCCGGCCcAGUa -3'
miRNA:   3'- -GCG--CGGGG--GCCGG--CGCGGUCGGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 154800 0.68 0.370834
Target:  5'- gGCGCCCggggguCgGGCUGgGCC-GCCAGGg -3'
miRNA:   3'- gCGCGGG------GgCCGGCgCGGuCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 154673 0.67 0.434313
Target:  5'- uGCGCCCCuCGGggcCCGUGCaaagaGGCgAGGa -3'
miRNA:   3'- gCGCGGGG-GCC---GGCGCGg----UCGgUUCg -5'
33625 5' -66.2 NC_007605.1 + 153096 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 152893 0.67 0.451143
Target:  5'- aGCGauCCCCCGGuuGggaaucuuCGCCAGCCc--- -3'
miRNA:   3'- gCGC--GGGGGCCggC--------GCGGUCGGuucg -5'
33625 5' -66.2 NC_007605.1 + 151731 0.68 0.370834
Target:  5'- gGCGCCCggggguCgGGCUGgGCC-GCCAGGg -3'
miRNA:   3'- gCGCGGG------GgCCGGCgCGGuCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 151088 0.7 0.300848
Target:  5'- aCGCaauuuGCCCCCcugggcGGCCGCaGCCuGCCccucGGCg -3'
miRNA:   3'- -GCG-----CGGGGG------CCGGCG-CGGuCGGu---UCG- -5'
33625 5' -66.2 NC_007605.1 + 150754 0.77 0.096021
Target:  5'- cCGUGUCCCagccgaGGCCGCGCCAGagcaGAGCc -3'
miRNA:   3'- -GCGCGGGGg-----CCGGCGCGGUCgg--UUCG- -5'
33625 5' -66.2 NC_007605.1 + 150692 0.67 0.409766
Target:  5'- gGUGCacgaCCCggaGGCUGCGUCucgugacauGGCCAGGCc -3'
miRNA:   3'- gCGCGg---GGG---CCGGCGCGG---------UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 150273 0.66 0.489375
Target:  5'- gGCGUCuagguugucacuucgCUCGGCCG-GCCAGaaGAGCg -3'
miRNA:   3'- gCGCGG---------------GGGCCGGCgCGGUCggUUCG- -5'
33625 5' -66.2 NC_007605.1 + 150027 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 148663 0.68 0.370834
Target:  5'- gGCGCCCggggguCgGGCUGgGCC-GCCAGGg -3'
miRNA:   3'- gCGCGGG------GgCCGGCgCGGuCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 146958 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 145594 0.68 0.370834
Target:  5'- gGCGCCCggggguCgGGCUGgGCC-GCCAGGg -3'
miRNA:   3'- gCGCGGG------GgCCGGCgCGGuCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 143889 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 143146 0.73 0.18352
Target:  5'- uGCGCUCCCaGGCCG-GaCCcugguGCCAGGCa -3'
miRNA:   3'- gCGCGGGGG-CCGGCgC-GGu----CGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.