miRNA display CGI


Results 81 - 100 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 132393 0.67 0.442683
Target:  5'- uCGCcaGCCgCCGGgCGgGCCGGCCu--- -3'
miRNA:   3'- -GCG--CGGgGGCCgGCgCGGUCGGuucg -5'
33625 5' -66.2 NC_007605.1 + 132355 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 132230 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 132105 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 131980 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 131867 0.69 0.307365
Target:  5'- aGCGCcaggaaCCCCGGCUGCcCCAGgaCCuGGCg -3'
miRNA:   3'- gCGCG------GGGGCCGGCGcGGUC--GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 131394 0.67 0.451143
Target:  5'- gGCuGCCCCCuggaccccuaGGCCuGUGCCAuggggacccccuGCCAgucGGCg -3'
miRNA:   3'- gCG-CGGGGG----------CCGG-CGCGGU------------CGGU---UCG- -5'
33625 5' -66.2 NC_007605.1 + 131336 0.67 0.434313
Target:  5'- cCGgGCCCCUGGUgGC-UCGGCCGcGGUc -3'
miRNA:   3'- -GCgCGGGGGCCGgCGcGGUCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 127964 0.69 0.313988
Target:  5'- -aUGCCCCC-GCCGCGCaGGUCA-GCa -3'
miRNA:   3'- gcGCGGGGGcCGGCGCGgUCGGUuCG- -5'
33625 5' -66.2 NC_007605.1 + 124115 0.68 0.363357
Target:  5'- aGgGCCa-CGGCCGUGaCAGCCA-GCa -3'
miRNA:   3'- gCgCGGggGCCGGCGCgGUCGGUuCG- -5'
33625 5' -66.2 NC_007605.1 + 123296 0.66 0.494707
Target:  5'- uGCuGCCCCCgGGCCucuuggaauGCaGCUggGGCCAGGg -3'
miRNA:   3'- gCG-CGGGGG-CCGG---------CG-CGG--UCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 122808 0.69 0.348718
Target:  5'- gCGgGCgCUCGGUgGCucaGCCAGCCucuGGCa -3'
miRNA:   3'- -GCgCGgGGGCCGgCG---CGGUCGGu--UCG- -5'
33625 5' -66.2 NC_007605.1 + 120995 0.71 0.236143
Target:  5'- uGCGCCCgUGGUgGcCGCCGGCgcAGCa -3'
miRNA:   3'- gCGCGGGgGCCGgC-GCGGUCGguUCG- -5'
33625 5' -66.2 NC_007605.1 + 118207 0.68 0.355984
Target:  5'- gGgGCCacaCCGacCCGCGCCAGCuCAAGa -3'
miRNA:   3'- gCgCGGg--GGCc-GGCGCGGUCG-GUUCg -5'
33625 5' -66.2 NC_007605.1 + 117785 0.67 0.417852
Target:  5'- gGCuCCCCUcgaGGCCGCcCUGGcCCGGGCa -3'
miRNA:   3'- gCGcGGGGG---CCGGCGcGGUC-GGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 117214 0.67 0.434313
Target:  5'- uCG-GCCCUCGcGCagaCGCGCCAGgCCcuGCa -3'
miRNA:   3'- -GCgCGGGGGC-CG---GCGCGGUC-GGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 115743 0.67 0.434313
Target:  5'- aCGUGCCCCgauggcuaGGCCGU-CCGGCagcaugcccCGAGCa -3'
miRNA:   3'- -GCGCGGGGg-------CCGGCGcGGUCG---------GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 115415 0.69 0.344409
Target:  5'- aGUGCCCCCcuuuguccacaacguGGCCGU-CCGGuCCAAGa -3'
miRNA:   3'- gCGCGGGGG---------------CCGGCGcGGUC-GGUUCg -5'
33625 5' -66.2 NC_007605.1 + 115307 0.71 0.252542
Target:  5'- gGcCGCCCgaaCGGCCGUgGCCAGacaaCAGGCu -3'
miRNA:   3'- gC-GCGGGg--GCCGGCG-CGGUCg---GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 115181 0.66 0.511762
Target:  5'- aGUGCCCCCGacCCGacccccacagugcCGCCAGuCCcuGCu -3'
miRNA:   3'- gCGCGGGGGCc-GGC-------------GCGGUC-GGuuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.