miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 60263 0.73 0.183093
Target:  5'- gGCGCCUUCugaggguGGCCGUGUCGGCCGuGGCc -3'
miRNA:   3'- gCGCGGGGG-------CCGGCGCGGUCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 40331 0.73 0.18352
Target:  5'- uGCGCUCCCaGGCCG-GaCCcugguGCCAGGCa -3'
miRNA:   3'- gCGCGGGGG-CCGGCgC-GGu----CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 67987 0.71 0.252542
Target:  5'- -aUGCCCCCGGCCaGCGacaGGCUGAGg -3'
miRNA:   3'- gcGCGGGGGCCGG-CGCgg-UCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 38349 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38474 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38599 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38724 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38849 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38973 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 39098 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 59122 0.71 0.246974
Target:  5'- cCGCGCacggggccgguuCCCCGGgUGCGCUGGCUuuGCc -3'
miRNA:   3'- -GCGCG------------GGGGCCgGCGCGGUCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 55756 0.71 0.246974
Target:  5'- gGCGCCUggGGCCGagGCCacaccGGCCAGGCc -3'
miRNA:   3'- gCGCGGGggCCGGCg-CGG-----UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 143146 0.73 0.18352
Target:  5'- uGCGCUCCCaGGCCG-GaCCcugguGCCAGGCa -3'
miRNA:   3'- gCGCGGGGG-CCGGCgC-GGu----CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 71821 0.72 0.206025
Target:  5'- -aUGCCCCCGGCUccacgGCcCCGGCCAcuGGCc -3'
miRNA:   3'- gcGCGGGGGCCGG-----CGcGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 73315 0.72 0.215677
Target:  5'- -cUGgCCCCGGCaggugGCcugGCCGGCCAAGCa -3'
miRNA:   3'- gcGCgGGGGCCGg----CG---CGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 99161 0.72 0.215677
Target:  5'- cCGagGCCgCCGGCuccCGCGCCGGUCAGGg -3'
miRNA:   3'- -GCg-CGGgGGCCG---GCGCGGUCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 101165 0.72 0.220646
Target:  5'- uGCGgCCCCGGCgGUagaGUgggguacgCAGCCAGGCg -3'
miRNA:   3'- gCGCgGGGGCCGgCG---CG--------GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 50371 0.72 0.220646
Target:  5'- gGCuGCCCCCgaGGacggGCGCCGGCCGccAGCg -3'
miRNA:   3'- gCG-CGGGGG--CCgg--CGCGGUCGGU--UCG- -5'
33625 5' -66.2 NC_007605.1 + 54042 0.71 0.236143
Target:  5'- aGCGCCCggaccUCGGCCGCcUCGGCCucggucAGCa -3'
miRNA:   3'- gCGCGGG-----GGCCGGCGcGGUCGGu-----UCG- -5'
33625 5' -66.2 NC_007605.1 + 162034 0.71 0.241508
Target:  5'- gGCaGCCgCCGGCCGUacacCCGGCCcuGCa -3'
miRNA:   3'- gCG-CGGgGGCCGGCGc---GGUCGGuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.