miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 39598 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 39723 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 137377 0.7 0.275851
Target:  5'- cCGCcuCCCCCaGCC-CGCCAGCCAc-- -3'
miRNA:   3'- -GCGc-GGGGGcCGGcGCGGUCGGUucg -5'
33625 5' -66.2 NC_007605.1 + 159781 0.7 0.281941
Target:  5'- aGCGCCUCCucgcaGGCCcccCGCaccagGGCCAGGCg -3'
miRNA:   3'- gCGCGGGGG-----CCGGc--GCGg----UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 13749 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 16818 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 19887 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 39098 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38973 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38849 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 54042 0.71 0.236143
Target:  5'- aGCGCCCggaccUCGGCCGCcUCGGCCucggucAGCa -3'
miRNA:   3'- gCGCGGG-----GGCCGGCGcGGUCGGu-----UCG- -5'
33625 5' -66.2 NC_007605.1 + 162034 0.71 0.241508
Target:  5'- gGCaGCCgCCGGCCGUacacCCGGCCcuGCa -3'
miRNA:   3'- gCG-CGGgGGCCGGCGc---GGUCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 55756 0.71 0.246974
Target:  5'- gGCGCCUggGGCCGagGCCacaccGGCCAGGCc -3'
miRNA:   3'- gCGCGGGggCCGGCg-CGG-----UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 59122 0.71 0.246974
Target:  5'- cCGCGCacggggccgguuCCCCGGgUGCGCUGGCUuuGCc -3'
miRNA:   3'- -GCGCG------------GGGGCCgGCGCGGUCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 67987 0.71 0.252542
Target:  5'- -aUGCCCCCGGCCaGCGacaGGCUGAGg -3'
miRNA:   3'- gcGCGGGGGCCGG-CGCgg-UCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 38349 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38474 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38599 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38724 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 21924 0.7 0.288137
Target:  5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCg -3'
miRNA:   3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.