Results 101 - 120 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33625 | 5' | -66.2 | NC_007605.1 | + | 35231 | 0.7 | 0.288137 |
Target: 5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3' miRNA: 3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 3059 | 0.7 | 0.294439 |
Target: 5'- gCGCGCCCCCcgGGCCccaGUGCUGuGaUCGAGCa -3' miRNA: 3'- -GCGCGGGGG--CCGG---CGCGGU-C-GGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 33897 | 0.7 | 0.300203 |
Target: 5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCC-GGCc -3' miRNA: 3'- gCGCGGG-------------GGCCGGCgCGGUCGGuUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 151088 | 0.7 | 0.300848 |
Target: 5'- aCGCaauuuGCCCCCcugggcGGCCGCaGCCuGCCccucGGCg -3' miRNA: 3'- -GCG-----CGGGGG------CCGGCG-CGGuCGGu---UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 164913 | 0.69 | 0.307365 |
Target: 5'- gGC-CUCCUGuGUgGcCGCCGGCCAGGCu -3' miRNA: 3'- gCGcGGGGGC-CGgC-GCGGUCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 159781 | 0.7 | 0.281941 |
Target: 5'- aGCGCCUCCucgcaGGCCcccCGCaccagGGCCAGGCg -3' miRNA: 3'- gCGCGGGGG-----CCGGc--GCGg----UCGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 137377 | 0.7 | 0.275851 |
Target: 5'- cCGCcuCCCCCaGCC-CGCCAGCCAc-- -3' miRNA: 3'- -GCGc-GGGGGcCGGcGCGGUCGGUucg -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 67987 | 0.71 | 0.252542 |
Target: 5'- -aUGCCCCCGGCCaGCGacaGGCUGAGg -3' miRNA: 3'- gcGCGGGGGCCGG-CGCgg-UCGGUUCg -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38349 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38474 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38599 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38724 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38849 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 38973 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39098 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39223 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39348 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39473 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39598 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 39723 | 0.7 | 0.269867 |
Target: 5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3' miRNA: 3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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