miRNA display CGI


Results 121 - 140 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 159992 0.69 0.327558
Target:  5'- -cUGCCUCCGGCCGCcCCGGgcCCGGGa -3'
miRNA:   3'- gcGCGGGGGCCGGCGcGGUC--GGUUCg -5'
33625 5' -66.2 NC_007605.1 + 4861 0.69 0.334505
Target:  5'- uGCGCCCCgGGCaccagGgGCCaugaaAGCCuccuGGCg -3'
miRNA:   3'- gCGCGGGGgCCGg----CgCGG-----UCGGu---UCG- -5'
33625 5' -66.2 NC_007605.1 + 32162 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 29093 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 26024 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 38973 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 39098 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 39223 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 39348 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 39473 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 39598 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 39723 0.7 0.269867
Target:  5'- gGUGgCCCCGcugggcaccGCUGCGCCGccGCCAGGUc -3'
miRNA:   3'- gCGCgGGGGC---------CGGCGCGGU--CGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 40268 0.69 0.340138
Target:  5'- gCGCGCCCCguucacgggggaGGaCCGCgGCCgAGCCAccaggGGCc -3'
miRNA:   3'- -GCGCGGGGg-----------CC-GGCG-CGG-UCGGU-----UCG- -5'
33625 5' -66.2 NC_007605.1 + 137377 0.7 0.275851
Target:  5'- cCGCcuCCCCCaGCC-CGCCAGCCAc-- -3'
miRNA:   3'- -GCGc-GGGGGcCGGcGCGGUCGGUucg -5'
33625 5' -66.2 NC_007605.1 + 159781 0.7 0.281941
Target:  5'- aGCGCCUCCucgcaGGCCcccCGCaccagGGCCAGGCg -3'
miRNA:   3'- gCGCGGGGG-----CCGGc--GCGg----UCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 13749 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 16818 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 19887 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 21924 0.7 0.288137
Target:  5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCg -3'
miRNA:   3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 22955 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.