Results 41 - 60 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33625 | 5' | -66.2 | NC_007605.1 | + | 28682 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29877 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 113526 | 0.74 | 0.163216 |
Target: 5'- cCGCGgCCCCGGCCuccGCGgccCCGGCCuccGCg -3' miRNA: 3'- -GCGCgGGGGCCGG---CGC---GGUCGGuu-CG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28580 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 113571 | 0.74 | 0.152024 |
Target: 5'- cCGCGgCCCCGGCCuccGCGgccCCGGCCuccAGCc -3' miRNA: 3'- -GCGCgGGGGCCGG---CGC---GGUCGGu--UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 20491 | 0.72 | 0.219145 |
Target: 5'- uGCGCCCCCcgugacggagcuggGGCaCGgGCC-GCCGAGg -3' miRNA: 3'- gCGCGGGGG--------------CCG-GCgCGGuCGGUUCg -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28552 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30822 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30516 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30006 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29599 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29191 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28886 | 0.72 | 0.206025 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29905 | 0.72 | 0.201341 |
Target: 5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAcccccgccggAGCg -3' miRNA: 3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU----------UCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30794 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30386 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 30080 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29571 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 29265 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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33625 | 5' | -66.2 | NC_007605.1 | + | 28858 | 0.73 | 0.19225 |
Target: 5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3' miRNA: 3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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