miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 28886 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 29395 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 28654 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 28959 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 29367 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 29673 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30182 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30488 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30896 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30924 0.72 0.201341
Target:  5'- aGgGCCggaaccccgaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 103944 0.69 0.327558
Target:  5'- cCGUGCCUgcgUUGGCCacgGCgGCCAGCCGGGg -3'
miRNA:   3'- -GCGCGGG---GGCCGG---CG-CGGUCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 10344 0.69 0.306708
Target:  5'- uGCagGCCCCCggggcugGGCUGCGCaagcaGGCCGGGg -3'
miRNA:   3'- gCG--CGGGGG-------CCGGCGCGg----UCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 29803 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30210 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30822 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 20491 0.72 0.219145
Target:  5'- uGCGCCCCCcgugacggagcuggGGCaCGgGCC-GCCGAGg -3'
miRNA:   3'- gCGCGGGGG--------------CCG-GCgCGGuCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 132355 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 132854 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 30997 0.71 0.236143
Target:  5'- uGgGCCaCCCGGCCGC-CC--CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 109592 0.71 0.258213
Target:  5'- uCGCuGCCCCUGGCC-CGgCGG-CGGGCg -3'
miRNA:   3'- -GCG-CGGGGGCCGGcGCgGUCgGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.