miRNA display CGI


Results 101 - 120 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 157869 0.68 0.370834
Target:  5'- gGCGCCCggggguCgGGCUGgGCC-GCCAGGg -3'
miRNA:   3'- gCGCGGG------GgCCGGCgCGGuCGGUUCg -5'
33625 5' -66.2 NC_007605.1 + 2061 0.68 0.386101
Target:  5'- cCGCGgaccccgaCCCCCcGCCGCccGCCcGCCGuAGCg -3'
miRNA:   3'- -GCGC--------GGGGGcCGGCG--CGGuCGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 20240 0.68 0.393889
Target:  5'- aCGaGgCCCUGGCCGUGgCCAGguaCGGGCu -3'
miRNA:   3'- -GCgCgGGGGCCGGCGC-GGUCg--GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 65698 0.67 0.409766
Target:  5'- gGaCGCCCgaCGGCacCGCGUCAGCCugaaaauucuuGAGCc -3'
miRNA:   3'- gC-GCGGGg-GCCG--GCGCGGUCGG-----------UUCG- -5'
33625 5' -66.2 NC_007605.1 + 10911 0.67 0.417852
Target:  5'- gGgGCUgCUGGCgGCGgcguaCAGCCAGGUg -3'
miRNA:   3'- gCgCGGgGGCCGgCGCg----GUCGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 132105 0.71 0.230878
Target:  5'- gGCuGCCCCCGGa-GCGCCAGgaacCCcGGCu -3'
miRNA:   3'- gCG-CGGGGGCCggCGCGGUC----GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 79910 0.72 0.206025
Target:  5'- gCGgGCCCCaaaGUCGCGCCGGacauCCAGGCc -3'
miRNA:   3'- -GCgCGGGGgc-CGGCGCGGUC----GGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 28654 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 28959 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 29367 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 29673 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30182 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30488 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30896 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 30924 0.72 0.201341
Target:  5'- aGgGCCggaaccccgaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 28987 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 29293 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 29701 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30108 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5'
33625 5' -66.2 NC_007605.1 + 30618 0.72 0.206025
Target:  5'- aGgGCCggaaccccggaCCCGGCUGCaGCCGGCCAccccccgccggAGCg -3'
miRNA:   3'- gCgCGG-----------GGGCCGGCG-CGGUCGGU-----------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.