miRNA display CGI


Results 21 - 40 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33625 5' -66.2 NC_007605.1 + 109661 0.66 0.494707
Target:  5'- -aCGCCCCCcgucgcGGCUGUGCCcGuCCuGGCc -3'
miRNA:   3'- gcGCGGGGG------CCGGCGCGGuC-GGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 23790 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 37389 0.66 0.494707
Target:  5'- gGCGCCCggcauaCCaGCUGaCGCCAuGgCAGGCu -3'
miRNA:   3'- gCGCGGG------GGcCGGC-GCGGU-CgGUUCG- -5'
33625 5' -66.2 NC_007605.1 + 71518 0.66 0.493817
Target:  5'- gGCuCCCCCGGCCGCaaauucuGCCccCCucuGCu -3'
miRNA:   3'- gCGcGGGGGCCGGCG-------CGGucGGuu-CG- -5'
33625 5' -66.2 NC_007605.1 + 150273 0.66 0.489375
Target:  5'- gGCGUCuagguugucacuucgCUCGGCCG-GCCAGaaGAGCg -3'
miRNA:   3'- gCGCGG---------------GGGCCGGCgCGGUCggUUCG- -5'
33625 5' -66.2 NC_007605.1 + 38520 0.66 0.485836
Target:  5'- uCG-GCCUCCcGCUcUGCCAGCuCGAGCg -3'
miRNA:   3'- -GCgCGGGGGcCGGcGCGGUCG-GUUCG- -5'
33625 5' -66.2 NC_007605.1 + 153096 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 140820 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 143889 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 159234 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 156165 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 150027 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 106379 0.66 0.485836
Target:  5'- --aGCCCCCcGCUGCGCCugAGCUcccGCu -3'
miRNA:   3'- gcgCGGGGGcCGGCGCGG--UCGGuu-CG- -5'
33625 5' -66.2 NC_007605.1 + 12124 0.66 0.485836
Target:  5'- gGUGCCCC-GGCCG-GCUggGGCacgaGAGCc -3'
miRNA:   3'- gCGCGGGGgCCGGCgCGG--UCGg---UUCG- -5'
33625 5' -66.2 NC_007605.1 + 146958 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 73752 0.66 0.485836
Target:  5'- gGCGCCCCCuGUagGCGUCuaucguccuuGCCAcAGCg -3'
miRNA:   3'- gCGCGGGGGcCGg-CGCGGu---------CGGU-UCG- -5'
33625 5' -66.2 NC_007605.1 + 137751 0.66 0.485836
Target:  5'- gGCGCCUCCucggGGCCaGCuGCCggggGGCCcuGCc -3'
miRNA:   3'- gCGCGGGGG----CCGG-CG-CGG----UCGGuuCG- -5'
33625 5' -66.2 NC_007605.1 + 51707 0.66 0.482308
Target:  5'- gGCGgCCCUGGCCucggugagaagcucGCGUagccacaCGGCCuGGCg -3'
miRNA:   3'- gCGCgGGGGCCGG--------------CGCG-------GUCGGuUCG- -5'
33625 5' -66.2 NC_007605.1 + 81452 0.66 0.480549
Target:  5'- gGCGUgugcaccaguacccgCCCCGGCUGgGCCuauuguccGGCCcuggGAGCc -3'
miRNA:   3'- gCGCG---------------GGGGCCGGCgCGG--------UCGG----UUCG- -5'
33625 5' -66.2 NC_007605.1 + 12365 0.66 0.47704
Target:  5'- uCGgGUCCCUGGgaggacaggCGCGCCGGCgAGGg -3'
miRNA:   3'- -GCgCGGGGGCCg--------GCGCGGUCGgUUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.