miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33626 5' -54.4 NC_007605.1 + 122226 0.66 0.959686
Target:  5'- aGACACuGGGUgacGGCCCgGguccucucggagaagGCAAAGGCCa -3'
miRNA:   3'- -CUGUG-UCCG---UUGGGaC---------------UGUUUCCGGg -5'
33626 5' -54.4 NC_007605.1 + 55256 0.66 0.959686
Target:  5'- -uUACAGGCAACUacaUGgggccGCAuuuccagccggcgcuGAGGCCCu -3'
miRNA:   3'- cuGUGUCCGUUGGg--AC-----UGU---------------UUCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 72953 0.66 0.958212
Target:  5'- cGGCACAGGuCAuagauuUCCUccagcGACcaGGGGGCCCc -3'
miRNA:   3'- -CUGUGUCC-GUu-----GGGA-----CUG--UUUCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 38781 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 38656 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 151068 0.66 0.958212
Target:  5'- gGGCuCAGGCGGCCCcaGACAcgcaauuuGCCCc -3'
miRNA:   3'- -CUGuGUCCGUUGGGa-CUGUuuc-----CGGG- -5'
33626 5' -54.4 NC_007605.1 + 38531 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 140353 0.66 0.958212
Target:  5'- aGAC-CAGGagGGCgCCUGGaggcGGGCCCg -3'
miRNA:   3'- -CUGuGUCCg-UUG-GGACUguu-UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 116555 0.66 0.958212
Target:  5'- aGACAgaaggaGGuGCAGgCCUGGCGccugGAGGCCg -3'
miRNA:   3'- -CUGUg-----UC-CGUUgGGACUGU----UUCCGGg -5'
33626 5' -54.4 NC_007605.1 + 85238 0.66 0.958212
Target:  5'- ---uCAGGUGccGCCCguuccccGGCAGAGGCCUc -3'
miRNA:   3'- cuguGUCCGU--UGGGa------CUGUUUCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 39280 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 39405 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 39530 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 39655 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 39155 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 38406 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 38281 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 146491 0.66 0.958212
Target:  5'- aGAC-CAGGagGGCgCCUGGaggcGGGCCCg -3'
miRNA:   3'- -CUGuGUCCg-UUG-GGACUguu-UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 137284 0.66 0.958212
Target:  5'- aGAC-CAGGagGGCgCCUGGaggcGGGCCCg -3'
miRNA:   3'- -CUGuGUCCg-UUG-GGACUguu-UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 39030 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.