miRNA display CGI


Results 41 - 60 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33626 5' -54.4 NC_007605.1 + 156529 0.66 0.957838
Target:  5'- uGCugAGGCcgggguccaggggGACCCgagGGCcuuAGAGGCCa -3'
miRNA:   3'- cUGugUCCG-------------UUGGGa--CUG---UUUCCGGg -5'
33626 5' -54.4 NC_007605.1 + 147322 0.66 0.957838
Target:  5'- uGCugAGGCcgggguccaggggGACCCgagGGCcuuAGAGGCCa -3'
miRNA:   3'- cUGugUCCG-------------UUGGGa--CUG---UUUCCGGg -5'
33626 5' -54.4 NC_007605.1 + 141184 0.66 0.957838
Target:  5'- uGCugAGGCcgggguccaggggGACCCgagGGCcuuAGAGGCCa -3'
miRNA:   3'- cUGugUCCG-------------UUGGGa--CUG---UUUCCGGg -5'
33626 5' -54.4 NC_007605.1 + 144253 0.66 0.957838
Target:  5'- uGCugAGGCcgggguccaggggGACCCgagGGCcuuAGAGGCCa -3'
miRNA:   3'- cUGugUCCG-------------UUGGGa--CUG---UUUCCGGg -5'
33626 5' -54.4 NC_007605.1 + 56390 0.66 0.957462
Target:  5'- aACAUccgGGGCAGCgCCgguggggaaggcGGCGGAGGCCg -3'
miRNA:   3'- cUGUG---UCCGUUG-GGa-----------CUGUUUCCGGg -5'
33626 5' -54.4 NC_007605.1 + 86400 0.66 0.957084
Target:  5'- --aACGGGCGGCaCCUGAgGAgguggcgugggaguGGGCgCCc -3'
miRNA:   3'- cugUGUCCGUUG-GGACUgUU--------------UCCG-GG- -5'
33626 5' -54.4 NC_007605.1 + 20828 0.66 0.954369
Target:  5'- -cCGCGGGCcgaggggauguGGCCCUGAguCAGucccGGGCUCu -3'
miRNA:   3'- cuGUGUCCG-----------UUGGGACU--GUU----UCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 65127 0.66 0.954369
Target:  5'- --gGCcGGCAGCCCcuucauccuuuUGAaGGAGGCCUg -3'
miRNA:   3'- cugUGuCCGUUGGG-----------ACUgUUUCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 165963 0.66 0.954369
Target:  5'- gGGCGCGGGUcccccuAGCCCcGGCGGGGaUCCg -3'
miRNA:   3'- -CUGUGUCCG------UUGGGaCUGUUUCcGGG- -5'
33626 5' -54.4 NC_007605.1 + 117551 0.66 0.953171
Target:  5'- -cCACGGGgGACUucuucucggagcugCUGACcGAGGCCg -3'
miRNA:   3'- cuGUGUCCgUUGG--------------GACUGuUUCCGGg -5'
33626 5' -54.4 NC_007605.1 + 2026 0.66 0.950293
Target:  5'- aACACuuGGGCAcggagaguGCCCUGG---AGGCCUc -3'
miRNA:   3'- cUGUG--UCCGU--------UGGGACUguuUCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 54216 0.66 0.950293
Target:  5'- gGAgGCAGGUuAgCCUGGCcuGGGUCa -3'
miRNA:   3'- -CUgUGUCCGuUgGGACUGuuUCCGGg -5'
33626 5' -54.4 NC_007605.1 + 121510 0.66 0.950293
Target:  5'- -uCACAGGUGGCCUgcuggccgUGGCAGAGuCCUg -3'
miRNA:   3'- cuGUGUCCGUUGGG--------ACUGUUUCcGGG- -5'
33626 5' -54.4 NC_007605.1 + 69875 0.66 0.950293
Target:  5'- --gAUAGG-GACCCUGGCu-AGGCgCCg -3'
miRNA:   3'- cugUGUCCgUUGGGACUGuuUCCG-GG- -5'
33626 5' -54.4 NC_007605.1 + 108999 0.66 0.950293
Target:  5'- uGGCAgcUAGGCugucuGCCaccaggucaUGACcGGGGCCCa -3'
miRNA:   3'- -CUGU--GUCCGu----UGGg--------ACUGuUUCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 96749 0.66 0.950293
Target:  5'- cGCGCAGGCc-CCCUccagguaGAAGGCCa -3'
miRNA:   3'- cUGUGUCCGuuGGGAcug----UUUCCGGg -5'
33626 5' -54.4 NC_007605.1 + 59582 0.66 0.950293
Target:  5'- gGugACAGGU--CCC-GGCu--GGCCCg -3'
miRNA:   3'- -CugUGUCCGuuGGGaCUGuuuCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 3657 0.66 0.950293
Target:  5'- uGGCACA-GCAGCCCgGGgu-AGGUCCc -3'
miRNA:   3'- -CUGUGUcCGUUGGGaCUguuUCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 85455 0.66 0.950293
Target:  5'- --gGCuGGCAGCCUUcACcAGGGUCCg -3'
miRNA:   3'- cugUGuCCGUUGGGAcUGuUUCCGGG- -5'
33626 5' -54.4 NC_007605.1 + 160492 0.66 0.950293
Target:  5'- -cCAgGGGCGAgCagcgcGGCAGAGGCCUc -3'
miRNA:   3'- cuGUgUCCGUUgGga---CUGUUUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.