miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33627 3' -52.6 NC_007605.1 + 47448 0.68 0.958525
Target:  5'- ---cCCgGGAGAcGGUGGuGGGGGg- -3'
miRNA:   3'- guaaGGaCCUUUuUCACCuCCCCCgc -5'
33627 3' -52.6 NC_007605.1 + 9901 0.68 0.957772
Target:  5'- ---aCCUGGcccucuuuGUGGAcGGGGGCu -3'
miRNA:   3'- guaaGGACCuuuuu---CACCU-CCCCCGc -5'
33627 3' -52.6 NC_007605.1 + 140156 0.68 0.950572
Target:  5'- --aUCCUGGGcucuGAAGcccggGGAaGGGGCGa -3'
miRNA:   3'- guaAGGACCUu---UUUCa----CCUcCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 149363 0.68 0.950572
Target:  5'- --aUCCUGGGcucuGAAGcccggGGAaGGGGCGa -3'
miRNA:   3'- guaAGGACCUu---UUUCa----CCUcCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 143225 0.68 0.950572
Target:  5'- --aUCCUGGGcucuGAAGcccggGGAaGGGGCGa -3'
miRNA:   3'- guaAGGACCUu---UUUCa----CCUcCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 137087 0.68 0.950572
Target:  5'- --aUCCUGGGcucuGAAGcccggGGAaGGGGCGa -3'
miRNA:   3'- guaAGGACCUu---UUUCa----CCUcCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 155501 0.68 0.950572
Target:  5'- --aUCCUGGGcucuGAAGcccggGGAaGGGGCGa -3'
miRNA:   3'- guaAGGACCUu---UUUCa----CCUcCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 146294 0.68 0.950572
Target:  5'- --aUCCUGGGcucuGAAGcccggGGAaGGGGCGa -3'
miRNA:   3'- guaAGGACCUu---UUUCa----CCUcCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 152432 0.68 0.950572
Target:  5'- --aUCCUGGGcucuGAAGcccggGGAaGGGGCGa -3'
miRNA:   3'- guaAGGACCUu---UUUCa----CCUcCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 158570 0.68 0.950572
Target:  5'- --aUCCUGGGcucuGAAGcccggGGAaGGGGCGa -3'
miRNA:   3'- guaAGGACCUu---UUUCa----CCUcCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 11853 0.68 0.941661
Target:  5'- gGggCCUGcGAGGAGGcgcUGGcGGGGGCa -3'
miRNA:   3'- gUaaGGAC-CUUUUUC---ACCuCCCCCGc -5'
33627 3' -52.6 NC_007605.1 + 104064 0.69 0.936838
Target:  5'- ---aCCUGGA------GGAGGGGGCu -3'
miRNA:   3'- guaaGGACCUuuuucaCCUCCCCCGc -5'
33627 3' -52.6 NC_007605.1 + 63077 0.69 0.936838
Target:  5'- ---cCCcGGggGAGGUGGcggucgccGGGGGUGg -3'
miRNA:   3'- guaaGGaCCuuUUUCACCu-------CCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 139368 0.69 0.928608
Target:  5'- --cUUCUGGggGGaccggggcaguggacAGgggcgGGAGGGGGCu -3'
miRNA:   3'- guaAGGACCuuUU---------------UCa----CCUCCCCCGc -5'
33627 3' -52.6 NC_007605.1 + 142437 0.69 0.928608
Target:  5'- --cUUCUGGggGGaccggggcaguggacAGgggcgGGAGGGGGCu -3'
miRNA:   3'- guaAGGACCuuUU---------------UCa----CCUCCCCCGc -5'
33627 3' -52.6 NC_007605.1 + 157781 0.69 0.928608
Target:  5'- --cUUCUGGggGGaccggggcaguggacAGgggcgGGAGGGGGCu -3'
miRNA:   3'- guaAGGACCuuUU---------------UCa----CCUCCCCCGc -5'
33627 3' -52.6 NC_007605.1 + 148575 0.69 0.928608
Target:  5'- --cUUCUGGggGGaccggggcaguggacAGgggcgGGAGGGGGCu -3'
miRNA:   3'- guaAGGACCuuUU---------------UCa----CCUCCCCCGc -5'
33627 3' -52.6 NC_007605.1 + 151644 0.69 0.928608
Target:  5'- --cUUCUGGggGGaccggggcaguggacAGgggcgGGAGGGGGCu -3'
miRNA:   3'- guaAGGACCuuUU---------------UCa----CCUCCCCCGc -5'
33627 3' -52.6 NC_007605.1 + 154712 0.69 0.928608
Target:  5'- --cUUCUGGggGGaccggggcaguggacAGgggcgGGAGGGGGCu -3'
miRNA:   3'- guaAGGACCuuUU---------------UCa----CCUCCCCCGc -5'
33627 3' -52.6 NC_007605.1 + 145506 0.69 0.928608
Target:  5'- --cUUCUGGggGGaccggggcaguggacAGgggcgGGAGGGGGCu -3'
miRNA:   3'- guaAGGACCuuUU---------------UCa----CCUCCCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.