miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33627 3' -52.6 NC_007605.1 + 171310 0.66 0.985387
Target:  5'- ---gUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- guaaGGACCuuUUUCa-CCU---CCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 171305 0.66 0.985387
Target:  5'- gGUgugUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- gUAa--GGACCuuUUUCa-CCU---CCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 171223 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 171082 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 170772 0.66 0.985387
Target:  5'- ---gUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- guaaGGACCuuUUUCa-CCU---CCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 170767 0.66 0.985387
Target:  5'- gGUgugUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- gUAa--GGACCuuUUUCa-CCU---CCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 170685 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 170545 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 170250 0.66 0.985387
Target:  5'- ---gUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- guaaGGACCuuUUUCa-CCU---CCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 170245 0.66 0.985387
Target:  5'- gGUgugUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- gUAa--GGACCuuUUUCa-CCU---CCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 170163 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 170022 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 169712 0.66 0.985387
Target:  5'- ---gUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- guaaGGACCuuUUUCa-CCU---CCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 169707 0.66 0.985387
Target:  5'- gGUgugUCUGGugGGGGcgGGAgcgGGGGGCGg -3'
miRNA:   3'- gUAa--GGACCuuUUUCa-CCU---CCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 169626 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 169485 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 168770 0.67 0.971699
Target:  5'- ---gCCUaGGGAAGAG-GaGAGGGGGgGu -3'
miRNA:   3'- guaaGGA-CCUUUUUCaC-CUCCCCCgC- -5'
33627 3' -52.6 NC_007605.1 + 158570 0.68 0.950572
Target:  5'- --aUCCUGGGcucuGAAGcccggGGAaGGGGCGa -3'
miRNA:   3'- guaAGGACCUu---UUUCa----CCUcCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 157988 0.74 0.702963
Target:  5'- ---cCCUGGAcgggacuGGGGUGGAcacagGGGGGCGg -3'
miRNA:   3'- guaaGGACCUu------UUUCACCU-----CCCCCGC- -5'
33627 3' -52.6 NC_007605.1 + 157781 0.69 0.928608
Target:  5'- --cUUCUGGggGGaccggggcaguggacAGgggcgGGAGGGGGCu -3'
miRNA:   3'- guaAGGACCuuUU---------------UCa----CCUCCCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.