miRNA display CGI


Results 21 - 40 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33627 5' -70.5 NC_007605.1 + 75074 0.66 0.332973
Target:  5'- aCCC-CGGCCUCCaCuGCCUCCUCG-ACc -3'
miRNA:   3'- -GGGcGCCGGGGG-GuCGGGGGGGCgUG- -5'
33627 5' -70.5 NC_007605.1 + 12727 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 15796 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 60289 0.66 0.332973
Target:  5'- gCCGUGGCCagggCCCaccuggcggcGGCgUCCCgGCACa -3'
miRNA:   3'- gGGCGCCGGg---GGG----------UCGgGGGGgCGUG- -5'
33627 5' -70.5 NC_007605.1 + 25002 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 18865 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 34209 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 31140 0.66 0.332973
Target:  5'- aCCCGggucuCGGCCagCCgAGCCgaccggCCCCGCGCc -3'
miRNA:   3'- -GGGC-----GCCGGg-GGgUCGGg-----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 165500 0.66 0.332973
Target:  5'- cCCCGUGGCCCacaCCuGCCCaaugucCUCUGCc- -3'
miRNA:   3'- -GGGCGCCGGGg--GGuCGGG------GGGGCGug -5'
33627 5' -70.5 NC_007605.1 + 50406 0.66 0.326254
Target:  5'- cCCCGUGGCCUuuggcacgggCCUGGCaCCCaCCGCu- -3'
miRNA:   3'- -GGGCGCCGGG----------GGGUCGgGGG-GGCGug -5'
33627 5' -70.5 NC_007605.1 + 159519 0.66 0.326254
Target:  5'- gCCGgGGCaCCUCCgGGCUCUCCCGgGa -3'
miRNA:   3'- gGGCgCCG-GGGGG-UCGGGGGGGCgUg -5'
33627 5' -70.5 NC_007605.1 + 17121 0.66 0.326254
Target:  5'- aUCCGCGuGUUCUCCuGCCUCCUgGCGg -3'
miRNA:   3'- -GGGCGC-CGGGGGGuCGGGGGGgCGUg -5'
33627 5' -70.5 NC_007605.1 + 108877 0.66 0.326254
Target:  5'- gUCUGgGGacgaCCCCgCuGCCCgCCUGCGCg -3'
miRNA:   3'- -GGGCgCCg---GGGG-GuCGGGgGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 36431 0.66 0.326254
Target:  5'- gCCCGggugGGCUUCCCGGCagaggCCCUGCGCc -3'
miRNA:   3'- -GGGCg---CCGGGGGGUCGgg---GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 108548 0.66 0.326254
Target:  5'- aCCCcCGGCgaccgccaccuCCCCCggGGCCagcagCCCUGCGCg -3'
miRNA:   3'- -GGGcGCCG-----------GGGGG--UCGGg----GGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 110756 0.66 0.319636
Target:  5'- -aCGgGGCCCCUCcgaugccugggAGUCCCCCCagGCGg -3'
miRNA:   3'- ggGCgCCGGGGGG-----------UCGGGGGGG--CGUg -5'
33627 5' -70.5 NC_007605.1 + 121478 0.66 0.319636
Target:  5'- aUCCGCcGCCUCCCAGCUgCCCaaaauGC-Ca -3'
miRNA:   3'- -GGGCGcCGGGGGGUCGGgGGGg----CGuG- -5'
33627 5' -70.5 NC_007605.1 + 32579 0.66 0.31312
Target:  5'- ----aGaGCCCCCCc-CCCCCCCGUAUa -3'
miRNA:   3'- gggcgC-CGGGGGGucGGGGGGGCGUG- -5'
33627 5' -70.5 NC_007605.1 + 5591 0.66 0.31312
Target:  5'- cCCCGCcuuugGGCaCCCCacgggguGCuCCCCCUGgACa -3'
miRNA:   3'- -GGGCG-----CCG-GGGGgu-----CG-GGGGGGCgUG- -5'
33627 5' -70.5 NC_007605.1 + 79900 0.66 0.31312
Target:  5'- cCCCGC-GCCUgCgGGCCCCaaagUCGCGCc -3'
miRNA:   3'- -GGGCGcCGGGgGgUCGGGGg---GGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.