Results 1 - 20 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33628 | 5' | -66.2 | NC_007605.1 | + | 464 | 0.68 | 0.386101 |
Target: 5'- cCGCGgaccccgaCCCCCcGCCGCccGCCcGCCGuAGCg -3' miRNA: 3'- -GCGC--------GGGGGcCGGCG--CGGuCGGU-UCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 1001 | 0.68 | 0.386101 |
Target: 5'- cCGCGgaccccgaCCCCCcGCCGCccGCCcGCCGuAGCg -3' miRNA: 3'- -GCGC--------GGGGGcCGGCG--CGGuCGGU-UCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 1524 | 0.68 | 0.386101 |
Target: 5'- cCGCGgaccccgaCCCCCcGCCGCccGCCcGCCGuAGCg -3' miRNA: 3'- -GCGC--------GGGGGcCGGCG--CGGuCGGU-UCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 2061 | 0.68 | 0.386101 |
Target: 5'- cCGCGgaccccgaCCCCCcGCCGCccGCCcGCCGuAGCg -3' miRNA: 3'- -GCGC--------GGGGGcCGGCG--CGGuCGGU-UCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 3059 | 0.7 | 0.294439 |
Target: 5'- gCGCGCCCCCcgGGCCccaGUGCUGuGaUCGAGCa -3' miRNA: 3'- -GCGCGGGGG--CCGG---CGCGGU-C-GGUUCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 4861 | 0.69 | 0.334505 |
Target: 5'- uGCGCCCCgGGCaccagGgGCCaugaaAGCCuccuGGCg -3' miRNA: 3'- gCGCGGGGgCCGg----CgCGG-----UCGGu---UCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 5017 | 0.66 | 0.494707 |
Target: 5'- -cUGCCCUggcaGGCCGUGCCA-CCGuGGCg -3' miRNA: 3'- gcGCGGGGg---CCGGCGCGGUcGGU-UCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 9580 | 0.67 | 0.417852 |
Target: 5'- aCGCGgCCCUgcagGGCCGgGUguaCGGCCGgcGGCu -3' miRNA: 3'- -GCGCgGGGG----CCGGCgCG---GUCGGU--UCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 10344 | 0.69 | 0.306708 |
Target: 5'- uGCagGCCCCCggggcugGGCUGCGCaagcaGGCCGGGg -3' miRNA: 3'- gCG--CGGGGG-------CCGGCGCGg----UCGGUUCg -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 10782 | 0.67 | 0.409766 |
Target: 5'- cCGCGUcgcaggCCUCGGCCGgGCUgcuGCUggGUg -3' miRNA: 3'- -GCGCG------GGGGCCGGCgCGGu--CGGuuCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 10911 | 0.67 | 0.417852 |
Target: 5'- gGgGCUgCUGGCgGCGgcguaCAGCCAGGUg -3' miRNA: 3'- gCgCGGgGGCCGgCGCg----GUCGGUUCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 11011 | 0.72 | 0.196749 |
Target: 5'- uGCGCaaCgCCGGCC-UGCUGGCCGAGCu -3' miRNA: 3'- gCGCG--GgGGCCGGcGCGGUCGGUUCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 11629 | 0.69 | 0.334505 |
Target: 5'- gCGCGgUCCCGGgcCCGgGgCGGCCGgaGGCa -3' miRNA: 3'- -GCGCgGGGGCC--GGCgCgGUCGGU--UCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 12124 | 0.66 | 0.485836 |
Target: 5'- gGUGCCCC-GGCCG-GCUggGGCacgaGAGCc -3' miRNA: 3'- gCGCGGGGgCCGGCgCGG--UCGg---UUCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 12164 | 0.68 | 0.393889 |
Target: 5'- gGCGCCCUcuCGGaCGCGCUcaAGCgCAAGg -3' miRNA: 3'- gCGCGGGG--GCCgGCGCGG--UCG-GUUCg -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 12181 | 0.68 | 0.355984 |
Target: 5'- aCGCaCCCCgGGCCagGCcaccuuagacCCGGCCAAGCc -3' miRNA: 3'- -GCGcGGGGgCCGG--CGc---------GGUCGGUUCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 12365 | 0.66 | 0.47704 |
Target: 5'- uCGgGUCCCUGGgaggacaggCGCGCCGGCgAGGg -3' miRNA: 3'- -GCgCGGGGGCCg--------GCGCGGUCGgUUCg -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 12414 | 0.77 | 0.09119 |
Target: 5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3' miRNA: 3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 12717 | 0.69 | 0.348718 |
Target: 5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCc -3' miRNA: 3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5' |
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33628 | 5' | -66.2 | NC_007605.1 | + | 12789 | 0.67 | 0.417039 |
Target: 5'- uGCGCCgggcggaCgCGGUCaGCcCCGGCCAGGCc -3' miRNA: 3'- gCGCGG-------GgGCCGG-CGcGGUCGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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