miRNA display CGI


Results 21 - 40 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33629 5' -67.6 NC_007605.1 + 74752 0.66 0.456674
Target:  5'- gGGCCUUCUCCUG-GGUCaUCUgcggGGCCCu -3'
miRNA:   3'- -CCGGAAGGGGGCgCCGGgGGG----UCGGG- -5'
33629 5' -67.6 NC_007605.1 + 164912 0.66 0.456674
Target:  5'- uGGCC-UCCUgUGUGGCCg-CCGGCCa -3'
miRNA:   3'- -CCGGaAGGGgGCGCCGGggGGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 11607 0.66 0.456674
Target:  5'- aGGCCgggcggCCCagaggagggCGCGG-UCCCgGGCCCg -3'
miRNA:   3'- -CCGGaa----GGGg--------GCGCCgGGGGgUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 30925 0.66 0.455832
Target:  5'- gGGCCggaaCCCCGacccggcugcagcCGGCCaCCCCccGCCg -3'
miRNA:   3'- -CCGGaag-GGGGC-------------GCCGG-GGGGu-CGGg -5'
33629 5' -67.6 NC_007605.1 + 120963 0.66 0.448284
Target:  5'- cGCC-UCCCCa-CGGCCgucgggcugcgaCCCCGugcGCCCg -3'
miRNA:   3'- cCGGaAGGGGgcGCCGG------------GGGGU---CGGG- -5'
33629 5' -67.6 NC_007605.1 + 61810 0.66 0.448284
Target:  5'- gGGCCUccaUCUCUGCcGCCaUCCCGGCCa -3'
miRNA:   3'- -CCGGAa--GGGGGCGcCGG-GGGGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 12527 0.66 0.448284
Target:  5'- gGGCUcuUUCCCCCacccagcaacGUGGCCCU--GGCUCg -3'
miRNA:   3'- -CCGG--AAGGGGG----------CGCCGGGGggUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 75698 0.66 0.448284
Target:  5'- uGCCccUCCuCCUGCuccuGCCCCuCCuGCCCc -3'
miRNA:   3'- cCGGa-AGG-GGGCGc---CGGGG-GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 75137 0.66 0.448284
Target:  5'- uGCCccUCCuCCUGCuccuGCCCCuCCuGCCCc -3'
miRNA:   3'- cCGGa-AGG-GGGCGc---CGGGG-GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 74122 0.66 0.448284
Target:  5'- cGGCCUcuggcaUCCCCCuGUGGCUguuUCUUAGCgCu -3'
miRNA:   3'- -CCGGA------AGGGGG-CGCCGG---GGGGUCGgG- -5'
33629 5' -67.6 NC_007605.1 + 75518 0.66 0.448284
Target:  5'- uGCCccUCCuCCUGCuccuGCCCCuCCuGCCCc -3'
miRNA:   3'- cCGGa-AGG-GGGCGc---CGGGG-GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 75644 0.66 0.448284
Target:  5'- uGCCccUCCuCCUGCuccuGCCCCuCCuGCCCc -3'
miRNA:   3'- cCGGa-AGG-GGGCGc---CGGGG-GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 75563 0.66 0.448284
Target:  5'- uGCCccUCCuCCUGCuccuGCCCCuCCuGCCCc -3'
miRNA:   3'- cCGGa-AGG-GGGCGc---CGGGG-GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 115223 0.66 0.448284
Target:  5'- cGGCC-UCCgCCGCcuuCCCCaCCGGCgCu -3'
miRNA:   3'- -CCGGaAGGgGGCGcc-GGGG-GGUCGgG- -5'
33629 5' -67.6 NC_007605.1 + 8843 0.66 0.448284
Target:  5'- cGGCCgccagUCCCaugugcucgcuCUGCgagGGCCgggCCCCGGCCg -3'
miRNA:   3'- -CCGGa----AGGG-----------GGCG---CCGG---GGGGUCGGg -5'
33629 5' -67.6 NC_007605.1 + 75599 0.66 0.448284
Target:  5'- uGCCccUCCuCCUGCuccuGCCCCuCCuGCCCc -3'
miRNA:   3'- cCGGa-AGG-GGGCGc---CGGGG-GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 75236 0.66 0.448284
Target:  5'- uGCCccUCCuCCUGCuccuGCCCCuCCuGCCCc -3'
miRNA:   3'- cCGGa-AGG-GGGCGc---CGGGG-GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 75482 0.66 0.448284
Target:  5'- uGCCccUCCuCCUGCuccuGCCCCuCCuGCCCc -3'
miRNA:   3'- cCGGa-AGG-GGGCGc---CGGGG-GGuCGGG- -5'
33629 5' -67.6 NC_007605.1 + 163024 0.66 0.43998
Target:  5'- aGGUCccCUCCUGCaGGgUCCCCAGgCCg -3'
miRNA:   3'- -CCGGaaGGGGGCG-CCgGGGGGUCgGG- -5'
33629 5' -67.6 NC_007605.1 + 85934 0.66 0.43998
Target:  5'- aGGCC--CCCCCguGCGGCaUCUCgGGCUCu -3'
miRNA:   3'- -CCGGaaGGGGG--CGCCG-GGGGgUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.