miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33630 3' -57.7 NC_007605.1 + 91142 0.66 0.889229
Target:  5'- uGGUcAGuucguccaAAUGGCcacgAGGGGGCGGGuGGCu -3'
miRNA:   3'- cCCA-UC--------UUACUG----UCCCCCGCCC-CUGu -5'
33630 3' -57.7 NC_007605.1 + 63101 0.66 0.887232
Target:  5'- gGGGUGGcAGUGGaGGGGGGagcuucagcuggucUGGGuGGCGg -3'
miRNA:   3'- -CCCAUC-UUACUgUCCCCC--------------GCCC-CUGU- -5'
33630 3' -57.7 NC_007605.1 + 11768 0.66 0.882497
Target:  5'- cGGUGcaacggGGCAGGGGGaGGGuGGCGg -3'
miRNA:   3'- cCCAUcuua--CUGUCCCCCgCCC-CUGU- -5'
33630 3' -57.7 NC_007605.1 + 63367 0.66 0.882497
Target:  5'- cGGUGGcugugGACuGGGGuGCGGGuGCGg -3'
miRNA:   3'- cCCAUCuua--CUGuCCCC-CGCCCcUGU- -5'
33630 3' -57.7 NC_007605.1 + 131801 0.66 0.882497
Target:  5'- gGGGaGGGAUcGGCGGggcuGGGGUccaGGGGACc -3'
miRNA:   3'- -CCCaUCUUA-CUGUC----CCCCG---CCCCUGu -5'
33630 3' -57.7 NC_007605.1 + 78214 0.66 0.882497
Target:  5'- gGGGUGGGgcugGUGGCAuuuGGGGuuGGGGuaguCAc -3'
miRNA:   3'- -CCCAUCU----UACUGU---CCCCcgCCCCu---GU- -5'
33630 3' -57.7 NC_007605.1 + 78172 0.66 0.882497
Target:  5'- gGGGUGGGgcugGUGGCAuuuGGGGuuGGGGuaguCAc -3'
miRNA:   3'- -CCCAUCU----UACUGU---CCCCcgCCCCu---GU- -5'
33630 3' -57.7 NC_007605.1 + 59184 0.66 0.882497
Target:  5'- --------cGGCGGuGGGGCGGGGAgGa -3'
miRNA:   3'- cccaucuuaCUGUC-CCCCGCCCCUgU- -5'
33630 3' -57.7 NC_007605.1 + 171047 0.66 0.861045
Target:  5'- cGGG-GGGcau-CGGGGGGUGGGG-CAu -3'
miRNA:   3'- -CCCaUCUuacuGUCCCCCGCCCCuGU- -5'
33630 3' -57.7 NC_007605.1 + 169987 0.66 0.861045
Target:  5'- cGGG-GGGcau-CGGGGGGUGGGG-CAu -3'
miRNA:   3'- -CCCaUCUuacuGUCCCCCGCCCCuGU- -5'
33630 3' -57.7 NC_007605.1 + 49893 0.66 0.861045
Target:  5'- cGGUGG-AUGAgaggAGGGGGauccggaGGGGACc -3'
miRNA:   3'- cCCAUCuUACUg---UCCCCCg------CCCCUGu -5'
33630 3' -57.7 NC_007605.1 + 38292 0.66 0.853494
Target:  5'- uGGGcugGGGAUG--GGGaGGGCGGGGcuggcGCAg -3'
miRNA:   3'- -CCCa--UCUUACugUCC-CCCGCCCC-----UGU- -5'
33630 3' -57.7 NC_007605.1 + 52086 0.66 0.853494
Target:  5'- -cGUAGGAaGACGGGGuuucGCGGGGGa- -3'
miRNA:   3'- ccCAUCUUaCUGUCCCc---CGCCCCUgu -5'
33630 3' -57.7 NC_007605.1 + 51179 0.66 0.853494
Target:  5'- uGGG-AGAGUGAU-GGGGGCGGccaaucccGGGg- -3'
miRNA:   3'- -CCCaUCUUACUGuCCCCCGCC--------CCUgu -5'
33630 3' -57.7 NC_007605.1 + 18711 0.67 0.84575
Target:  5'- cGGGaUAGcagGACGGGGGGCuGGcGAa- -3'
miRNA:   3'- -CCC-AUCuuaCUGUCCCCCGcCC-CUgu -5'
33630 3' -57.7 NC_007605.1 + 60616 0.67 0.84575
Target:  5'- aGGGUgaagaGGAGUGAaaagAGGGaGGUGGGccaGGCAa -3'
miRNA:   3'- -CCCA-----UCUUACUg---UCCC-CCGCCC---CUGU- -5'
33630 3' -57.7 NC_007605.1 + 47555 0.67 0.84575
Target:  5'- aGGUGGAccUGACGuugcaggcccuuGGGGaGCGGGGGu- -3'
miRNA:   3'- cCCAUCUu-ACUGU------------CCCC-CGCCCCUgu -5'
33630 3' -57.7 NC_007605.1 + 135763 0.67 0.837822
Target:  5'- aGGGUAGGAgGAUuuuGGGGGGaaauccucagGGuGGGCAg -3'
miRNA:   3'- -CCCAUCUUaCUG---UCCCCCg---------CC-CCUGU- -5'
33630 3' -57.7 NC_007605.1 + 171587 0.67 0.837822
Target:  5'- gGGGgcaucgGGgGGGGuguuGGCGGGGGCAu -3'
miRNA:   3'- -CCCaucuuaCUgUCCC----CCGCCCCUGU- -5'
33630 3' -57.7 NC_007605.1 + 82001 0.67 0.829715
Target:  5'- aGGGUAaGAGg---AGGaGGGCGGGuGGCAg -3'
miRNA:   3'- -CCCAU-CUUacugUCC-CCCGCCC-CUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.