miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33630 5' -66.2 NC_007605.1 + 141996 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 169653 0.66 0.459691
Target:  5'- gGCGCCgCCGG--GCG-CAGCCAuGCg -3'
miRNA:   3'- gCGCGGgGGCCggCGCgGUCGGUuCG- -5'
33630 5' -66.2 NC_007605.1 + 48855 0.66 0.512666
Target:  5'- aCGCuGacaCCCUGGCCGCGCC--CCAGu- -3'
miRNA:   3'- -GCG-Cg--GGGGCCGGCGCGGucGGUUcg -5'
33630 5' -66.2 NC_007605.1 + 141283 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 141894 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 101847 0.66 0.465726
Target:  5'- gGCGCCCUCGGCUccucggccauuccuGUucaccccacGCCGGCCucGGUc -3'
miRNA:   3'- gCGCGGGGGCCGG--------------CG---------CGGUCGGu-UCG- -5'
33630 5' -66.2 NC_007605.1 + 141181 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 141487 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 141589 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 140977 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 142302 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 140672 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 142098 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 141792 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 141385 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 142200 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 35449 0.66 0.459691
Target:  5'- -aCGUCCCCGGCCuccCGCuCGGgUAAGUg -3'
miRNA:   3'- gcGCGGGGGCCGGc--GCG-GUCgGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 63644 0.66 0.459691
Target:  5'- uGgGCCUgCaGCCGUGCCccGCCGAuGCg -3'
miRNA:   3'- gCgCGGGgGcCGGCGCGGu-CGGUU-CG- -5'
33630 5' -66.2 NC_007605.1 + 141079 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33630 5' -66.2 NC_007605.1 + 140773 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.