miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33631 3' -54.9 NC_007605.1 + 138977 0.66 0.955948
Target:  5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3'
miRNA:   3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5'
33631 3' -54.9 NC_007605.1 + 165976 0.66 0.950412
Target:  5'- gGGcGACCguGCCuga-GUGACCAuAGGu -3'
miRNA:   3'- -CCaCUGGguCGGuucgCACUGGU-UCC- -5'
33631 3' -54.9 NC_007605.1 + 69755 0.66 0.963103
Target:  5'- --gGACCgaGGCC-GGCGUGgggugaacaggaaugGCCGAGGa -3'
miRNA:   3'- ccaCUGGg-UCGGuUCGCAC---------------UGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 80170 0.66 0.961742
Target:  5'- aGGUGugUCAGCCaAAGag-GAUCAGGc -3'
miRNA:   3'- -CCACugGGUCGG-UUCgcaCUGGUUCc -5'
33631 3' -54.9 NC_007605.1 + 131345 0.66 0.946186
Target:  5'- uGGUGGCUCGGCCGcGGUccucccccGUGAaCGGGGc -3'
miRNA:   3'- -CCACUGGGUCGGU-UCG--------CACUgGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 91167 0.66 0.946186
Target:  5'- uGGUaACCCauaGGCCAuccGGCG--GCCAGGGu -3'
miRNA:   3'- -CCAcUGGG---UCGGU---UCGCacUGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 59735 0.66 0.945751
Target:  5'- uGGgucugGACCCgGGCCGugcgagcaaaggcGGCGaGAaCCGAGGg -3'
miRNA:   3'- -CCa----CUGGG-UCGGU-------------UCGCaCU-GGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 61039 0.66 0.946186
Target:  5'- uGGagagGACCCGGCgaaGGGCG-GGCCAGa- -3'
miRNA:   3'- -CCa---CUGGGUCGg--UUCGCaCUGGUUcc -5'
33631 3' -54.9 NC_007605.1 + 148184 0.66 0.955948
Target:  5'- aGGUGGCCUAGCaacGCGaacccccuugggcccUGACCuuuGGu -3'
miRNA:   3'- -CCACUGGGUCGguuCGC---------------ACUGGuu-CC- -5'
33631 3' -54.9 NC_007605.1 + 144868 0.67 0.941729
Target:  5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3'
miRNA:   3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5'
33631 3' -54.9 NC_007605.1 + 7608 0.67 0.941729
Target:  5'- aGGUGGCcacacuggggaCCGGCUAcGCG-GGCCAcAGGu -3'
miRNA:   3'- -CCACUG-----------GGUCGGUuCGCaCUGGU-UCC- -5'
33631 3' -54.9 NC_007605.1 + 48004 0.67 0.921564
Target:  5'- --gGGCCgUGGCCAGGgGUuACCGAGGc -3'
miRNA:   3'- ccaCUGG-GUCGGUUCgCAcUGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 137065 0.67 0.932117
Target:  5'- --aGGCCCccgaAGCCcacuGUGUGGCCGAGu -3'
miRNA:   3'- ccaCUGGG----UCGGuu--CGCACUGGUUCc -5'
33631 3' -54.9 NC_007605.1 + 92562 0.67 0.93704
Target:  5'- -aUGGCCCAaaaauugcagauGUUGAGCGUGGCCAu-- -3'
miRNA:   3'- ccACUGGGU------------CGGUUCGCACUGGUucc -5'
33631 3' -54.9 NC_007605.1 + 1388 0.67 0.941729
Target:  5'- cGGUGGCCUgcucaccaugguAGCCGGcgcuGUGUGGCUGAcGGu -3'
miRNA:   3'- -CCACUGGG------------UCGGUU----CGCACUGGUU-CC- -5'
33631 3' -54.9 NC_007605.1 + 150920 0.67 0.93704
Target:  5'- gGGUGGgaCgGGgCAGGCGUGAUCcuGGg -3'
miRNA:   3'- -CCACUg-GgUCgGUUCGCACUGGuuCC- -5'
33631 3' -54.9 NC_007605.1 + 73183 0.67 0.941729
Target:  5'- ---cGCCCAGCCAAugucuGCGUGcgaGCCGGGc -3'
miRNA:   3'- ccacUGGGUCGGUU-----CGCAC---UGGUUCc -5'
33631 3' -54.9 NC_007605.1 + 138730 0.67 0.941729
Target:  5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3'
miRNA:   3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5'
33631 3' -54.9 NC_007605.1 + 141799 0.67 0.941729
Target:  5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3'
miRNA:   3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5'
33631 3' -54.9 NC_007605.1 + 91319 0.67 0.93704
Target:  5'- cGGgGGCCgGGUCAAGUGgcugggGcACCGGGGc -3'
miRNA:   3'- -CCaCUGGgUCGGUUCGCa-----C-UGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.