miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33631 3' -54.9 NC_007605.1 + 138730 0.67 0.941729
Target:  5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3'
miRNA:   3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5'
33631 3' -54.9 NC_007605.1 + 18408 0.67 0.940347
Target:  5'- --cGGCCUAcGCCGAGCGgcacggcguucccgUGGCCGuGGa -3'
miRNA:   3'- ccaCUGGGU-CGGUUCGC--------------ACUGGUuCC- -5'
33631 3' -54.9 NC_007605.1 + 150920 0.67 0.93704
Target:  5'- gGGUGGgaCgGGgCAGGCGUGAUCcuGGg -3'
miRNA:   3'- -CCACUg-GgUCgGUUCGCACUGGuuCC- -5'
33631 3' -54.9 NC_007605.1 + 92562 0.67 0.93704
Target:  5'- -aUGGCCCAaaaauugcagauGUUGAGCGUGGCCAu-- -3'
miRNA:   3'- ccACUGGGU------------CGGUUCGCACUGGUucc -5'
33631 3' -54.9 NC_007605.1 + 91319 0.67 0.93704
Target:  5'- cGGgGGCCgGGUCAAGUGgcugggGcACCGGGGc -3'
miRNA:   3'- -CCaCUGGgUCGGUUCGCa-----C-UGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 49706 0.67 0.93704
Target:  5'- --aGAUCCAcCCAGGgGUGGCCAugaccguggucAGGa -3'
miRNA:   3'- ccaCUGGGUcGGUUCgCACUGGU-----------UCC- -5'
33631 3' -54.9 NC_007605.1 + 103937 0.67 0.93704
Target:  5'- ---aGCCCGGCCGugccuGCGuUGGCCAcGGc -3'
miRNA:   3'- ccacUGGGUCGGUu----CGC-ACUGGUuCC- -5'
33631 3' -54.9 NC_007605.1 + 10937 0.67 0.93704
Target:  5'- aGGUGuacGCCCuggcgguugAGCUGAGCGUGugCAc-- -3'
miRNA:   3'- -CCAC---UGGG---------UCGGUUCGCACugGUucc -5'
33631 3' -54.9 NC_007605.1 + 20802 0.67 0.936558
Target:  5'- --aGGCCCgggggcuGGCgAGGCGgcguccgcgGGCCGAGGg -3'
miRNA:   3'- ccaCUGGG-------UCGgUUCGCa--------CUGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 137065 0.67 0.932117
Target:  5'- --aGGCCCccgaAGCCcacuGUGUGGCCGAGu -3'
miRNA:   3'- ccaCUGGG----UCGGuu--CGCACUGGUUCc -5'
33631 3' -54.9 NC_007605.1 + 169808 0.67 0.932117
Target:  5'- cGGccGCgCCAGCCAAGCcc--CCAAGGg -3'
miRNA:   3'- -CCacUG-GGUCGGUUCGcacuGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 170346 0.67 0.932117
Target:  5'- cGGccGCgCCAGCCAAGCcc--CCAAGGg -3'
miRNA:   3'- -CCacUG-GGUCGGUUCGcacuGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 171406 0.67 0.932117
Target:  5'- cGGccGCgCCAGCCAAGCcc--CCAAGGg -3'
miRNA:   3'- -CCacUG-GGUCGGUUCGcacuGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 170868 0.67 0.932117
Target:  5'- cGGccGCgCCAGCCAAGCcc--CCAAGGg -3'
miRNA:   3'- -CCacUG-GGUCGGUUCGcacuGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 87163 0.67 0.921564
Target:  5'- -aUGGCuCCAGCCGAGCcuggacacucaGUgGGCCGAcGGg -3'
miRNA:   3'- ccACUG-GGUCGGUUCG-----------CA-CUGGUU-CC- -5'
33631 3' -54.9 NC_007605.1 + 62182 0.67 0.921564
Target:  5'- uGUGGCCUuuGGCCugcGGUGUGAggacacggUCAAGGa -3'
miRNA:   3'- cCACUGGG--UCGGu--UCGCACU--------GGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 162185 0.67 0.921564
Target:  5'- aGUGACCCuuuAGCCAcucuggggGGCucUGGCCAAGc -3'
miRNA:   3'- cCACUGGG---UCGGU--------UCGc-ACUGGUUCc -5'
33631 3' -54.9 NC_007605.1 + 48004 0.67 0.921564
Target:  5'- --gGGCCgUGGCCAGGgGUuACCGAGGc -3'
miRNA:   3'- ccaCUGG-GUCGGUUCgCAcUGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 56323 0.67 0.915935
Target:  5'- -cUGGCCaCGGCCGuucgGGCGgccuccGCCAGGGa -3'
miRNA:   3'- ccACUGG-GUCGGU----UCGCac----UGGUUCC- -5'
33631 3' -54.9 NC_007605.1 + 151392 0.67 0.915935
Target:  5'- -cUGGCCaCGGCCAGGgccuCGUaGGCCGAGa -3'
miRNA:   3'- ccACUGG-GUCGGUUC----GCA-CUGGUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.