miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33632 3' -52.6 NC_007605.1 + 34960 0.69 0.909011
Target:  5'- --aUCCguaguaaGGAGGcacGGGUGGAGGGGGg- -3'
miRNA:   3'- guaAGGa------CCUUU---UUCACCUCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 35015 0.66 0.979376
Target:  5'- gUAggCCggaGGggGGuGUGGGuGGGGGUGg -3'
miRNA:   3'- -GUaaGGa--CCuuUUuCACCU-CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 37883 0.7 0.889372
Target:  5'- -cUUCCcGuGAGGcAG-GGAGGGGGCGc -3'
miRNA:   3'- guAAGGaC-CUUUuUCaCCUCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 39794 0.72 0.809503
Target:  5'- ---aCCUGGAAugcAG-GGuGGGGGCGu -3'
miRNA:   3'- guaaGGACCUUuu-UCaCCuCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 40152 0.78 0.468696
Target:  5'- ---aCCUGGAAGGcAGgGGGGGGGGCa -3'
miRNA:   3'- guaaGGACCUUUU-UCaCCUCCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 45400 0.67 0.971412
Target:  5'- ----gCUGGAAucgagcgGGGGUGGA-GGGGCGu -3'
miRNA:   3'- guaagGACCUU-------UUUCACCUcCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 46622 0.67 0.965553
Target:  5'- ---cUCUGGGucucuGGAAGUGGAGagaugcuccGGGGCGc -3'
miRNA:   3'- guaaGGACCU-----UUUUCACCUC---------CCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 47403 0.73 0.762831
Target:  5'- ---aCCgccaaggggGGAGAGccAGUGGGGGGGGUGu -3'
miRNA:   3'- guaaGGa--------CCUUUU--UCACCUCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 47448 0.68 0.958525
Target:  5'- ---cCCgGGAGAcGGUGGuGGGGGg- -3'
miRNA:   3'- guaaGGaCCUUUuUCACCuCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 48416 0.67 0.965553
Target:  5'- --cUCUgagggggGGAGAAAGacgGGcGGGGGCGu -3'
miRNA:   3'- guaAGGa------CCUUUUUCa--CCuCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 51173 0.71 0.843894
Target:  5'- gGggCCUGG-GAGAGUGauGGGGGCGg -3'
miRNA:   3'- gUaaGGACCuUUUUCACcuCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 52375 0.67 0.970538
Target:  5'- --gUCCUGGAAGAagaugaagccggugGGUGGAccggcgaugcgguGGcGGGUGa -3'
miRNA:   3'- guaAGGACCUUUU--------------UCACCU-------------CC-CCCGC- -5'
33632 3' -52.6 NC_007605.1 + 54025 0.67 0.974456
Target:  5'- --gUCCUuGGugugcacGAAGgcgcaggGGAGGGGGCa -3'
miRNA:   3'- guaAGGA-CCuu-----UUUCa------CCUCCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 56194 0.67 0.965223
Target:  5'- gCAUUCUUGGAccggacggccacguuGUGGAcaaagGGGGGCa -3'
miRNA:   3'- -GUAAGGACCUuuuu-----------CACCU-----CCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 57458 0.71 0.835576
Target:  5'- ------aGGAAGAAGUGGAGaaggagccGGGGCGg -3'
miRNA:   3'- guaaggaCCUUUUUCACCUC--------CCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 57509 0.71 0.835576
Target:  5'- ------aGGAAGAAGUGGAGaaggagccGGGGCGg -3'
miRNA:   3'- guaaggaCCUUUUUCACCUC--------CCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 57561 0.66 0.980919
Target:  5'- ----gUUGGAGGAggagaaagagucguGGUGGuGGGGGCu -3'
miRNA:   3'- guaagGACCUUUU--------------UCACCuCCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 63077 0.69 0.936838
Target:  5'- ---cCCcGGggGAGGUGGcggucgccGGGGGUGg -3'
miRNA:   3'- guaaGGaCCuuUUUCACCu-------CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 72328 0.73 0.772444
Target:  5'- ----aUUGGGAcuugAAGGUGGAgGGGGGCGg -3'
miRNA:   3'- guaagGACCUU----UUUCACCU-CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 74356 0.66 0.983555
Target:  5'- aGUUCCacGAGAGaacccgccacguGGUGGA-GGGGCGa -3'
miRNA:   3'- gUAAGGacCUUUU------------UCACCUcCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.