miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33632 3' -52.6 NC_007605.1 + 34038 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 51173 0.71 0.843894
Target:  5'- gGggCCUGG-GAGAGUGauGGGGGCGg -3'
miRNA:   3'- gUaaGGACCuUUUUCACcuCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 12556 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 15625 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 18694 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 21763 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 24832 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 27901 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 30969 0.69 0.909011
Target:  5'- ---cCCgGGGA--AGUGGAGGGGGa- -3'
miRNA:   3'- guaaGGaCCUUuuUCACCUCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 57509 0.71 0.835576
Target:  5'- ------aGGAAGAAGUGGAGaaggagccGGGGCGg -3'
miRNA:   3'- guaaggaCCUUUUUCACCUC--------CCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 57458 0.71 0.835576
Target:  5'- ------aGGAAGAAGUGGAGaaggagccGGGGCGg -3'
miRNA:   3'- guaaggaCCUUUUUCACCUC--------CCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 39794 0.72 0.809503
Target:  5'- ---aCCUGGAAugcAG-GGuGGGGGCGu -3'
miRNA:   3'- guaaGGACCUUuu-UCaCCuCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 170022 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 170545 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 171082 1.08 0.007147
Target:  5'- gCAUUCCUGGAAAAAGUGGAGGGGGCGu -3'
miRNA:   3'- -GUAAGGACCUUUUUCACCUCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 40152 0.78 0.468696
Target:  5'- ---aCCUGGAAGGcAGgGGGGGGGGCa -3'
miRNA:   3'- guaaGGACCUUUU-UCaCCUCCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 169626 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 170163 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 170685 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 171223 0.73 0.753097
Target:  5'- aCGUUCCgGGGAucGGgggGGucGGGGGGCGc -3'
miRNA:   3'- -GUAAGGaCCUUuuUCa--CC--UCCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.