miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33632 3' -52.6 NC_007605.1 + 74854 0.66 0.979376
Target:  5'- -cUUCCccuacagggUGGAAAAauGGccuucuaccUGGAGGGGGCc -3'
miRNA:   3'- guAAGG---------ACCUUUU--UC---------ACCUCCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 35015 0.66 0.979376
Target:  5'- gUAggCCggaGGggGGuGUGGGuGGGGGUGg -3'
miRNA:   3'- -GUaaGGa--CCuuUUuCACCU-CCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 83300 0.66 0.979376
Target:  5'- ---cCCUGGuauGGAGccUGGGGGGccGGCGg -3'
miRNA:   3'- guaaGGACCuu-UUUC--ACCUCCC--CCGC- -5'
33632 3' -52.6 NC_007605.1 + 96334 0.66 0.977013
Target:  5'- --cUCgaGGGGAGAcaggGGAGGGGGUu -3'
miRNA:   3'- guaAGgaCCUUUUUca--CCUCCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 157364 0.66 0.977013
Target:  5'- -cUUCCcGGggGccGUGGGGGGcaccggugugguGGCGu -3'
miRNA:   3'- guAAGGaCCuuUuuCACCUCCC------------CCGC- -5'
33632 3' -52.6 NC_007605.1 + 135282 0.67 0.974456
Target:  5'- ------nGGugGGAGUGGuGGGGGCa -3'
miRNA:   3'- guaaggaCCuuUUUCACCuCCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 54025 0.67 0.974456
Target:  5'- --gUCCUuGGugugcacGAAGgcgcaggGGAGGGGGCa -3'
miRNA:   3'- guaAGGA-CCuu-----UUUCa------CCUCCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 6423 0.67 0.971699
Target:  5'- gGUUCCcaGAGAGGGUaaaaGAGGGGGCc -3'
miRNA:   3'- gUAAGGacCUUUUUCAc---CUCCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 168770 0.67 0.971699
Target:  5'- ---gCCUaGGGAAGAG-GaGAGGGGGgGu -3'
miRNA:   3'- guaaGGA-CCUUUUUCaC-CUCCCCCgC- -5'
33632 3' -52.6 NC_007605.1 + 45400 0.67 0.971412
Target:  5'- ----gCUGGAAucgagcgGGGGUGGA-GGGGCGu -3'
miRNA:   3'- guaagGACCUU-------UUUCACCUcCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 52375 0.67 0.970538
Target:  5'- --gUCCUGGAAGAagaugaagccggugGGUGGAccggcgaugcgguGGcGGGUGa -3'
miRNA:   3'- guaAGGACCUUUU--------------UCACCU-------------CC-CCCGC- -5'
33632 3' -52.6 NC_007605.1 + 11954 0.67 0.968733
Target:  5'- --cUCCUcGGgcGAcgcGGUGGAGGGcugaaGGCGg -3'
miRNA:   3'- guaAGGA-CCuuUU---UCACCUCCC-----CCGC- -5'
33632 3' -52.6 NC_007605.1 + 133987 0.67 0.968425
Target:  5'- gGUUgCUGGAGAGGGcaaggguuuuuacUGGAugGaGGGGCGa -3'
miRNA:   3'- gUAAgGACCUUUUUC-------------ACCU--C-CCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 46622 0.67 0.965553
Target:  5'- ---cUCUGGGucucuGGAAGUGGAGagaugcuccGGGGCGc -3'
miRNA:   3'- guaaGGACCU-----UUUUCACCUC---------CCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 48416 0.67 0.965553
Target:  5'- --cUCUgagggggGGAGAAAGacgGGcGGGGGCGu -3'
miRNA:   3'- guaAGGa------CCUUUUUCa--CCuCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 85611 0.67 0.965553
Target:  5'- ---aCCaGGGAAAGGaggGGAGuGGGGCc -3'
miRNA:   3'- guaaGGaCCUUUUUCa--CCUC-CCCCGc -5'
33632 3' -52.6 NC_007605.1 + 56194 0.67 0.965223
Target:  5'- gCAUUCUUGGAccggacggccacguuGUGGAcaaagGGGGGCa -3'
miRNA:   3'- -GUAAGGACCUuuuu-----------CACCU-----CCCCCGc -5'
33632 3' -52.6 NC_007605.1 + 112734 0.67 0.962153
Target:  5'- --gUCCUGGAc------GAGGGGGCGc -3'
miRNA:   3'- guaAGGACCUuuuucacCUCCCCCGC- -5'
33632 3' -52.6 NC_007605.1 + 5402 0.67 0.962153
Target:  5'- --aUCCcgUGGAGAGuagGGAGGGGGa- -3'
miRNA:   3'- guaAGG--ACCUUUUucaCCUCCCCCgc -5'
33632 3' -52.6 NC_007605.1 + 47448 0.68 0.958525
Target:  5'- ---cCCgGGAGAcGGUGGuGGGGGg- -3'
miRNA:   3'- guaaGGaCCUUUuUCACCuCCCCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.