miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33632 5' -70.5 NC_007605.1 + 28769 0.75 0.084037
Target:  5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3'
miRNA:   3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5'
33632 5' -70.5 NC_007605.1 + 30536 0.76 0.069985
Target:  5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3'
miRNA:   3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 33605 0.76 0.069985
Target:  5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3'
miRNA:   3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 159774 0.76 0.071007
Target:  5'- cCCCGCcagcGCCUCCucgCAGgCCCCCCGCACc -3'
miRNA:   3'- -GGGCGc---CGGGGG---GUCgGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 13424 0.75 0.084037
Target:  5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3'
miRNA:   3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5'
33632 5' -70.5 NC_007605.1 + 16493 0.75 0.084037
Target:  5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3'
miRNA:   3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5'
33632 5' -70.5 NC_007605.1 + 19562 0.75 0.084037
Target:  5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3'
miRNA:   3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5'
33632 5' -70.5 NC_007605.1 + 22631 0.75 0.084037
Target:  5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3'
miRNA:   3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5'
33632 5' -70.5 NC_007605.1 + 25700 0.75 0.084037
Target:  5'- cCCCgGCGGCCCggugUCAGuCCCCCCUGCAg -3'
miRNA:   3'- -GGG-CGCCGGGg---GGUC-GGGGGGGCGUg -5'
33632 5' -70.5 NC_007605.1 + 27467 0.76 0.069985
Target:  5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3'
miRNA:   3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 24398 0.76 0.069985
Target:  5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3'
miRNA:   3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 21329 0.76 0.069985
Target:  5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3'
miRNA:   3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 170057 1.09 0.000189
Target:  5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3'
miRNA:   3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 170580 1.09 0.000189
Target:  5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3'
miRNA:   3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 171117 1.09 0.000189
Target:  5'- cCCCGCGGCCCCCCAGCCCCCCCGCACa -3'
miRNA:   3'- -GGGCGCCGGGGGGUCGGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 50709 0.82 0.022985
Target:  5'- cUCCGCGGCUucuUCCCGGCCCCCCUGCu- -3'
miRNA:   3'- -GGGCGCCGG---GGGGUCGGGGGGGCGug -5'
33632 5' -70.5 NC_007605.1 + 34907 0.76 0.064457
Target:  5'- cCCCgGCGGCCCggugUCAGUCCCCCUGCAg -3'
miRNA:   3'- -GGG-CGCCGGGg---GGUCGGGGGGGCGUg -5'
33632 5' -70.5 NC_007605.1 + 12122 0.76 0.069985
Target:  5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3'
miRNA:   3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 15191 0.76 0.069985
Target:  5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3'
miRNA:   3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5'
33632 5' -70.5 NC_007605.1 + 18260 0.76 0.069985
Target:  5'- cCCC-CGGUCCCCaguagggccgccuGCCCCCCUGCACc -3'
miRNA:   3'- -GGGcGCCGGGGGgu-----------CGGGGGGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.