Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33633 | 3' | -57.7 | NC_007605.1 | + | 169610 | 0.67 | 0.812141 |
Target: 5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3' miRNA: 3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 170147 | 0.67 | 0.812141 |
Target: 5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3' miRNA: 3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 57791 | 0.67 | 0.829715 |
Target: 5'- aGGG-GGAAggcgagcugcUGAaGGGGGGCGauGGGGCGg -3' miRNA: 3'- -CCCaUCUU----------ACUgUCCCCCGC--CCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 170669 | 0.67 | 0.812141 |
Target: 5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3' miRNA: 3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 168533 | 0.67 | 0.821436 |
Target: 5'- aGGaAGAGUaaggGAaAGGGGGUGuGGGGCAa -3' miRNA: 3'- cCCaUCUUA----CUgUCCCCCGC-CCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 171207 | 0.67 | 0.812141 |
Target: 5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3' miRNA: 3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 153326 | 0.67 | 0.804394 |
Target: 5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3' miRNA: 3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 47555 | 0.67 | 0.84575 |
Target: 5'- aGGUGGAccUGACGuugcaggcccuuGGGGaGCGGGGGu- -3' miRNA: 3'- cCCAUCUu-ACUGU------------CCCC-CGCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 60616 | 0.67 | 0.84575 |
Target: 5'- aGGGUgaagaGGAGUGAaaagAGGGaGGUGGGccaGGCAa -3' miRNA: 3'- -CCCA-----UCUUACUg---UCCC-CCGCCC---CUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 171587 | 0.67 | 0.837822 |
Target: 5'- gGGGgcaucgGGgGGGGuguuGGCGGGGGCAu -3' miRNA: 3'- -CCCaucuuaCUgUCCC----CCGCCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 159464 | 0.67 | 0.804394 |
Target: 5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3' miRNA: 3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 159528 | 0.67 | 0.804394 |
Target: 5'- gGGGaGGAAcagGAgcgaAGGGGGaCGGGGAgGg -3' miRNA: 3'- -CCCaUCUUa--CUg---UCCCCC-GCCCCUgU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 8816 | 0.67 | 0.821436 |
Target: 5'- cGG-AGAcgGGCAGcuacGuGGCGGGGGCGg -3' miRNA: 3'- cCCaUCUuaCUGUCc---C-CCGCCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 156395 | 0.67 | 0.804394 |
Target: 5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3' miRNA: 3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 18711 | 0.67 | 0.84575 |
Target: 5'- cGGGaUAGcagGACGGGGGGCuGGcGAa- -3' miRNA: 3'- -CCC-AUCuuaCUGUCCCCCGcCC-CUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 150257 | 0.67 | 0.804394 |
Target: 5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3' miRNA: 3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 43740 | 0.67 | 0.828073 |
Target: 5'- gGGGUGGcaucgaaGGUGGCuuGGGGcuccggaGGUGGGGGCu -3' miRNA: 3'- -CCCAUC-------UUACUG--UCCC-------CCGCCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 147188 | 0.67 | 0.804394 |
Target: 5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3' miRNA: 3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 135763 | 0.67 | 0.837822 |
Target: 5'- aGGGUAGGAgGAUuuuGGGGGGaaauccucagGGuGGGCAg -3' miRNA: 3'- -CCCAUCUUaCUG---UCCCCCg---------CC-CCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 82001 | 0.67 | 0.829715 |
Target: 5'- aGGGUAaGAGg---AGGaGGGCGGGuGGCAg -3' miRNA: 3'- -CCCAU-CUUacugUCC-CCCGCCC-CUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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