miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 142451 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 157795 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 156640 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 138226 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 138043 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 151658 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 150987 0.68 0.749013
Target:  5'- aGGUugauAGAAUGucgguaccacgccACGGGGGGCGGGcccGCAu -3'
miRNA:   3'- cCCA----UCUUAC-------------UGUCCCCCGCCCc--UGU- -5'
33633 3' -57.7 NC_007605.1 + 139382 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 156457 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 141295 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 150319 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 58932 0.68 0.759325
Target:  5'- aGGGcGGGAgGuCAGGGGGCGGccGGcCAg -3'
miRNA:   3'- -CCCaUCUUaCuGUCCCCCGCC--CCuGU- -5'
33633 3' -57.7 NC_007605.1 + 147250 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 144181 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 141112 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 145520 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 154726 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 148589 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 150502 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 147433 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.