Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33633 | 3' | -57.7 | NC_007605.1 | + | 147433 | 0.68 | 0.749955 |
Target: 5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3' miRNA: 3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 144364 | 0.68 | 0.749955 |
Target: 5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3' miRNA: 3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 168774 | 0.68 | 0.795646 |
Target: 5'- aGGGaAGAGgaGAgGGGGGGUccucgaGGGGGCc -3' miRNA: 3'- -CCCaUCUUa-CUgUCCCCCG------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 95904 | 0.68 | 0.786756 |
Target: 5'- aGGGgcaGGAggGGCAGgaGGGGCaggaGGGGCAg -3' miRNA: 3'- -CCCa--UCUuaCUGUC--CCCCGc---CCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 150987 | 0.68 | 0.749013 |
Target: 5'- aGGUugauAGAAUGucgguaccacgccACGGGGGGCGGGcccGCAu -3' miRNA: 3'- cCCA----UCUUAC-------------UGUCCCCCGCCCc--UGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 53860 | 0.69 | 0.730927 |
Target: 5'- aGGGgAGccugGACAGGGgcuuugGGCGGGGAgGa -3' miRNA: 3'- -CCCaUCuua-CUGUCCC------CCGCCCCUgU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 48424 | 0.69 | 0.721287 |
Target: 5'- gGGGgagaaAGAcgGGCGGGGGcGUaGGGGAgGa -3' miRNA: 3'- -CCCa----UCUuaCUGUCCCC-CG-CCCCUgU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 165716 | 0.69 | 0.740487 |
Target: 5'- gGGGUGGGcgGUGAuCAGGGaGaacaauucccCGGGGACAc -3' miRNA: 3'- -CCCAUCU--UACU-GUCCCcC----------GCCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 59658 | 0.69 | 0.740487 |
Target: 5'- cGGGgAGGAUG-CGGaauGGCGGGGGCGu -3' miRNA: 3'- -CCCaUCUUACuGUCcc-CCGCCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 160863 | 0.69 | 0.740487 |
Target: 5'- cGGGU-GAcUGGUGGGGGGCaucuGGGGGCc -3' miRNA: 3'- -CCCAuCUuACUGUCCCCCG----CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 10713 | 0.69 | 0.701795 |
Target: 5'- uGGagGGAGUGugGGGuGGGCccGGGGCAg -3' miRNA: 3'- cCCa-UCUUACugUCC-CCCGc-CCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 57979 | 0.69 | 0.711573 |
Target: 5'- uGGUGGcGUGG-AGGGaGCGGGGACc -3' miRNA: 3'- cCCAUCuUACUgUCCCcCGCCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 120199 | 0.7 | 0.69196 |
Target: 5'- aGGGUGGGGcacgGACuGGucaGCGGGGACGg -3' miRNA: 3'- -CCCAUCUUa---CUGuCCcc-CGCCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 113277 | 0.7 | 0.69196 |
Target: 5'- uGGGgcccgAGcuuguguccAGUGAUGGGGaggcGGCGGGGACGc -3' miRNA: 3'- -CCCa----UC---------UUACUGUCCC----CCGCCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 110213 | 0.7 | 0.69196 |
Target: 5'- cGGcuguGggUGugGGGGcGGCGGcGGACc -3' miRNA: 3'- cCCau--CuuACugUCCC-CCGCC-CCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 110851 | 0.7 | 0.682079 |
Target: 5'- aGGGUgcAGAA-GACgaAGaGGGCGGGGGCc -3' miRNA: 3'- -CCCA--UCUUaCUG--UCcCCCGCCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 55028 | 0.7 | 0.646237 |
Target: 5'- gGGGUGGAAUgucagaccaagGccgauugagccucccGCGGGGGGagGGGGGCAc -3' miRNA: 3'- -CCCAUCUUA-----------C---------------UGUCCCCCg-CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 57031 | 0.7 | 0.672157 |
Target: 5'- cGGUguccAGuGUGAUGGGGGacGUGGGGGCAc -3' miRNA: 3'- cCCA----UCuUACUGUCCCC--CGCCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 71117 | 0.7 | 0.672157 |
Target: 5'- aGGGUcAGAGaGGcCAGGGGGCuGGG-CAa -3' miRNA: 3'- -CCCA-UCUUaCU-GUCCCCCGcCCCuGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 170622 | 0.71 | 0.632241 |
Target: 5'- cGGgcGGGcGGCGGGGGGuCGGGGuccGCGg -3' miRNA: 3'- cCCauCUUaCUGUCCCCC-GCCCC---UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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