miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 110213 0.7 0.69196
Target:  5'- cGGcuguGggUGugGGGGcGGCGGcGGACc -3'
miRNA:   3'- cCCau--CuuACugUCCC-CCGCC-CCUGu -5'
33633 3' -57.7 NC_007605.1 + 71117 0.7 0.672157
Target:  5'- aGGGUcAGAGaGGcCAGGGGGCuGGG-CAa -3'
miRNA:   3'- -CCCA-UCUUaCU-GUCCCCCGcCCCuGU- -5'
33633 3' -57.7 NC_007605.1 + 57031 0.7 0.672157
Target:  5'- cGGUguccAGuGUGAUGGGGGacGUGGGGGCAc -3'
miRNA:   3'- cCCA----UCuUACUGUCCCC--CGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 110851 0.7 0.682079
Target:  5'- aGGGUgcAGAA-GACgaAGaGGGCGGGGGCc -3'
miRNA:   3'- -CCCA--UCUUaCUG--UCcCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 120199 0.7 0.69196
Target:  5'- aGGGUGGGGcacgGACuGGucaGCGGGGACGg -3'
miRNA:   3'- -CCCAUCUUa---CUGuCCcc-CGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 55028 0.7 0.646237
Target:  5'- gGGGUGGAAUgucagaccaagGccgauugagccucccGCGGGGGGagGGGGGCAc -3'
miRNA:   3'- -CCCAUCUUA-----------C---------------UGUCCCCCg-CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 113277 0.7 0.69196
Target:  5'- uGGGgcccgAGcuuguguccAGUGAUGGGGaggcGGCGGGGACGc -3'
miRNA:   3'- -CCCa----UC---------UUACUGUCCC----CCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 160863 0.69 0.740487
Target:  5'- cGGGU-GAcUGGUGGGGGGCaucuGGGGGCc -3'
miRNA:   3'- -CCCAuCUuACUGUCCCCCG----CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 57979 0.69 0.711573
Target:  5'- uGGUGGcGUGG-AGGGaGCGGGGACc -3'
miRNA:   3'- cCCAUCuUACUgUCCCcCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 48424 0.69 0.721287
Target:  5'- gGGGgagaaAGAcgGGCGGGGGcGUaGGGGAgGa -3'
miRNA:   3'- -CCCa----UCUuaCUGUCCCC-CG-CCCCUgU- -5'
33633 3' -57.7 NC_007605.1 + 10713 0.69 0.701795
Target:  5'- uGGagGGAGUGugGGGuGGGCccGGGGCAg -3'
miRNA:   3'- cCCa-UCUUACugUCC-CCCGc-CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 53860 0.69 0.730927
Target:  5'- aGGGgAGccugGACAGGGgcuuugGGCGGGGAgGa -3'
miRNA:   3'- -CCCaUCuua-CUGUCCC------CCGCCCCUgU- -5'
33633 3' -57.7 NC_007605.1 + 59658 0.69 0.740487
Target:  5'- cGGGgAGGAUG-CGGaauGGCGGGGGCGu -3'
miRNA:   3'- -CCCaUCUUACuGUCcc-CCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 165716 0.69 0.740487
Target:  5'- gGGGUGGGcgGUGAuCAGGGaGaacaauucccCGGGGACAc -3'
miRNA:   3'- -CCCAUCU--UACU-GUCCCcC----------GCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 58932 0.68 0.759325
Target:  5'- aGGGcGGGAgGuCAGGGGGCGGccGGcCAg -3'
miRNA:   3'- -CCCaUCUUaCuGUCCCCCGCC--CCuGU- -5'
33633 3' -57.7 NC_007605.1 + 150987 0.68 0.749013
Target:  5'- aGGUugauAGAAUGucgguaccacgccACGGGGGGCGGGcccGCAu -3'
miRNA:   3'- cCCA----UCUUAC-------------UGUCCCCCGCCCc--UGU- -5'
33633 3' -57.7 NC_007605.1 + 138226 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 168774 0.68 0.795646
Target:  5'- aGGGaAGAGgaGAgGGGGGGUccucgaGGGGGCc -3'
miRNA:   3'- -CCCaUCUUa-CUgUCCCCCG------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 141295 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 95904 0.68 0.786756
Target:  5'- aGGGgcaGGAggGGCAGgaGGGGCaggaGGGGCAg -3'
miRNA:   3'- -CCCa--UCUuaCUGUC--CCCCGc---CCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.