Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33633 | 3' | -57.7 | NC_007605.1 | + | 144364 | 0.68 | 0.749955 |
Target: 5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3' miRNA: 3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 147433 | 0.68 | 0.749955 |
Target: 5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3' miRNA: 3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 58932 | 0.68 | 0.759325 |
Target: 5'- aGGGcGGGAgGuCAGGGGGCGGccGGcCAg -3' miRNA: 3'- -CCCaUCUUaCuGUCCCCCGCC--CCuGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 145520 | 0.68 | 0.786756 |
Target: 5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3' miRNA: 3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 142451 | 0.68 | 0.786756 |
Target: 5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3' miRNA: 3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 148589 | 0.68 | 0.786756 |
Target: 5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3' miRNA: 3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 154726 | 0.68 | 0.786756 |
Target: 5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3' miRNA: 3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 139382 | 0.68 | 0.786756 |
Target: 5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3' miRNA: 3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 95904 | 0.68 | 0.786756 |
Target: 5'- aGGGgcaGGAggGGCAGgaGGGGCaggaGGGGCAg -3' miRNA: 3'- -CCCa--UCUuaCUGUC--CCCCGc---CCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 151658 | 0.68 | 0.786756 |
Target: 5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3' miRNA: 3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 157795 | 0.68 | 0.786756 |
Target: 5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3' miRNA: 3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 138043 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 153388 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 156457 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 150319 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 147250 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 141112 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 144181 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 168774 | 0.68 | 0.795646 |
Target: 5'- aGGGaAGAGgaGAgGGGGGGUccucgaGGGGGCc -3' miRNA: 3'- -CCCaUCUUa-CUgUCCCCCG------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 137981 | 0.67 | 0.804394 |
Target: 5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3' miRNA: 3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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