miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 108041 0.72 0.572497
Target:  5'- aGGGgcGAA-GGguGGGGGUGGGuGCAa -3'
miRNA:   3'- -CCCauCUUaCUguCCCCCGCCCcUGU- -5'
33633 3' -57.7 NC_007605.1 + 109494 0.72 0.523747
Target:  5'- uGGUGGAGcacAguGGGGGCGGGGcCGg -3'
miRNA:   3'- cCCAUCUUac-UguCCCCCGCCCCuGU- -5'
33633 3' -57.7 NC_007605.1 + 110213 0.7 0.69196
Target:  5'- cGGcuguGggUGugGGGGcGGCGGcGGACc -3'
miRNA:   3'- cCCau--CuuACugUCCC-CCGCC-CCUGu -5'
33633 3' -57.7 NC_007605.1 + 110851 0.7 0.682079
Target:  5'- aGGGUgcAGAA-GACgaAGaGGGCGGGGGCc -3'
miRNA:   3'- -CCCA--UCUUaCUG--UCcCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 113277 0.7 0.69196
Target:  5'- uGGGgcccgAGcuuguguccAGUGAUGGGGaggcGGCGGGGACGc -3'
miRNA:   3'- -CCCa----UC---------UUACUGUCCC----CCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 120199 0.7 0.69196
Target:  5'- aGGGUGGGGcacgGACuGGucaGCGGGGACGg -3'
miRNA:   3'- -CCCAUCUUa---CUGuCCcc-CGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 120288 0.73 0.485923
Target:  5'- aGGGgAGAcgGAcCAGGGGGaaaaGGGGAgCAc -3'
miRNA:   3'- -CCCaUCUuaCU-GUCCCCCg---CCCCU-GU- -5'
33633 3' -57.7 NC_007605.1 + 128065 0.72 0.559696
Target:  5'- cGGGUGGAA--GCAuGGGGGaaaccugcgaaacuUGGGGGCAg -3'
miRNA:   3'- -CCCAUCUUacUGU-CCCCC--------------GCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 131640 0.77 0.320464
Target:  5'- cGGGUGGGAgcaGGgAGGGGGCGucccGGGACc -3'
miRNA:   3'- -CCCAUCUUa--CUgUCCCCCGC----CCCUGu -5'
33633 3' -57.7 NC_007605.1 + 131801 0.66 0.882497
Target:  5'- gGGGaGGGAUcGGCGGggcuGGGGUccaGGGGACc -3'
miRNA:   3'- -CCCaUCUUA-CUGUC----CCCCG---CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 135177 0.74 0.467502
Target:  5'- uGGUGGGGguGguGGGGGCGGGGGu- -3'
miRNA:   3'- cCCAUCUUacUguCCCCCGCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 135213 0.74 0.467502
Target:  5'- uGGUGGAGgugGugGGGGuGGUGGGGGu- -3'
miRNA:   3'- cCCAUCUUa--CugUCCC-CCGCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 135263 0.74 0.430911
Target:  5'- gGGGUGGug-GugGGGGGGguggugggaguggUGGGGGCAc -3'
miRNA:   3'- -CCCAUCuuaCugUCCCCC-------------GCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 135763 0.67 0.837822
Target:  5'- aGGGUAGGAgGAUuuuGGGGGGaaauccucagGGuGGGCAg -3'
miRNA:   3'- -CCCAUCUUaCUG---UCCCCCg---------CC-CCUGU- -5'
33633 3' -57.7 NC_007605.1 + 136513 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 137981 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 138043 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 138226 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 139382 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 139582 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.