miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 168533 0.67 0.821436
Target:  5'- aGGaAGAGUaaggGAaAGGGGGUGuGGGGCAa -3'
miRNA:   3'- cCCaUCUUA----CUgUCCCCCGC-CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 165716 0.69 0.740487
Target:  5'- gGGGUGGGcgGUGAuCAGGGaGaacaauucccCGGGGACAc -3'
miRNA:   3'- -CCCAUCU--UACU-GUCCCcC----------GCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 160863 0.69 0.740487
Target:  5'- cGGGU-GAcUGGUGGGGGGCaucuGGGGGCc -3'
miRNA:   3'- -CCCAuCUuACUGUCCCCCG----CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 159528 0.67 0.804394
Target:  5'- gGGGaGGAAcagGAgcgaAGGGGGaCGGGGAgGg -3'
miRNA:   3'- -CCCaUCUUa--CUg---UCCCCC-GCCCCUgU- -5'
33633 3' -57.7 NC_007605.1 + 159464 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 158592 0.74 0.458427
Target:  5'- cGGUAGGcugcaccgugGUGGCGGGGGGUGcGGGCu -3'
miRNA:   3'- cCCAUCU----------UACUGUCCCCCGCcCCUGu -5'
33633 3' -57.7 NC_007605.1 + 157995 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 157795 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 157350 0.67 0.829715
Target:  5'- aGGGUGcccaggGACuucccGGGGGCcgugGGGGGCAc -3'
miRNA:   3'- -CCCAUcuua--CUGu----CCCCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 156640 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 156457 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 156395 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 154926 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 154726 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 153571 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 153388 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 153326 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 151857 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 151658 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 150987 0.68 0.749013
Target:  5'- aGGUugauAGAAUGucgguaccacgccACGGGGGGCGGGcccGCAu -3'
miRNA:   3'- cCCA----UCUUAC-------------UGUCCCCCGCCCc--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.