Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33633 | 3' | -57.7 | NC_007605.1 | + | 150502 | 0.68 | 0.749955 |
Target: 5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3' miRNA: 3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 150319 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 150257 | 0.67 | 0.804394 |
Target: 5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3' miRNA: 3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 150197 | 0.74 | 0.431783 |
Target: 5'- aGGUgAGAGU--CGGGGGGCGGGcGACGg -3' miRNA: 3'- cCCA-UCUUAcuGUCCCCCGCCC-CUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 148788 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 148589 | 0.68 | 0.786756 |
Target: 5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3' miRNA: 3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 147433 | 0.68 | 0.749955 |
Target: 5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3' miRNA: 3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 147250 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 147188 | 0.67 | 0.804394 |
Target: 5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3' miRNA: 3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 145719 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 145520 | 0.68 | 0.786756 |
Target: 5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3' miRNA: 3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 144364 | 0.68 | 0.749955 |
Target: 5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3' miRNA: 3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 144181 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 144119 | 0.67 | 0.804394 |
Target: 5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3' miRNA: 3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 142651 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 142451 | 0.68 | 0.786756 |
Target: 5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3' miRNA: 3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 141295 | 0.68 | 0.749955 |
Target: 5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3' miRNA: 3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 141112 | 0.68 | 0.792993 |
Target: 5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3' miRNA: 3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 141050 | 0.67 | 0.804394 |
Target: 5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3' miRNA: 3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' |
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33633 | 3' | -57.7 | NC_007605.1 | + | 139582 | 0.82 | 0.153252 |
Target: 5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3' miRNA: 3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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