miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 120199 0.7 0.69196
Target:  5'- aGGGUGGGGcacgGACuGGucaGCGGGGACGg -3'
miRNA:   3'- -CCCAUCUUa---CUGuCCcc-CGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 110851 0.7 0.682079
Target:  5'- aGGGUgcAGAA-GACgaAGaGGGCGGGGGCc -3'
miRNA:   3'- -CCCA--UCUUaCUG--UCcCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 135263 0.74 0.430911
Target:  5'- gGGGUGGug-GugGGGGGGguggugggaguggUGGGGGCAc -3'
miRNA:   3'- -CCCAUCuuaCugUCCCCC-------------GCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 145719 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 145520 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 144364 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 34381 0.71 0.591325
Target:  5'- aGGUGGGcUGACAcagacuuggccuuGGGGGUGGuGGGCu -3'
miRNA:   3'- cCCAUCUuACUGU-------------CCCCCGCC-CCUGu -5'
33633 3' -57.7 NC_007605.1 + 142651 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 141295 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 139582 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 55028 0.7 0.646237
Target:  5'- gGGGUGGAAUgucagaccaagGccgauugagccucccGCGGGGGGagGGGGGCAc -3'
miRNA:   3'- -CCCAUCUUA-----------C---------------UGUCCCCCg-CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 10713 0.69 0.701795
Target:  5'- uGGagGGAGUGugGGGuGGGCccGGGGCAg -3'
miRNA:   3'- cCCa-UCUUACugUCC-CCCGc-CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 109494 0.72 0.523747
Target:  5'- uGGUGGAGcacAguGGGGGCGGGGcCGg -3'
miRNA:   3'- cCCAUCUUac-UguCCCCCGCCCCuGU- -5'
33633 3' -57.7 NC_007605.1 + 135177 0.74 0.467502
Target:  5'- uGGUGGGGguGguGGGGGCGGGGGu- -3'
miRNA:   3'- cCCAUCUUacUguCCCCCGCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 157995 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 148788 0.82 0.153252
Target:  5'- cGGGacUGGggUGGacacaGGGGGGCGGGGAUg -3'
miRNA:   3'- -CCC--AUCuuACUg----UCCCCCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 157795 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 148589 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 156640 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 147433 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.