miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 141112 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 160863 0.69 0.740487
Target:  5'- cGGGU-GAcUGGUGGGGGGCaucuGGGGGCc -3'
miRNA:   3'- -CCCAuCUuACUGUCCCCCG----CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 131640 0.77 0.320464
Target:  5'- cGGGUGGGAgcaGGgAGGGGGCGucccGGGACc -3'
miRNA:   3'- -CCCAUCUUa--CUgUCCCCCGC----CCCUGu -5'
33633 3' -57.7 NC_007605.1 + 138043 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 10812 0.79 0.226619
Target:  5'- uGGGUGGAGgagGGCAGGGcucCGGGGGCAg -3'
miRNA:   3'- -CCCAUCUUa--CUGUCCCcc-GCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 18363 0.67 0.829715
Target:  5'- aGGGgGGAGUGA-AGGGGGCGaGaaaGACGg -3'
miRNA:   3'- -CCCaUCUUACUgUCCCCCGC-Cc--CUGU- -5'
33633 3' -57.7 NC_007605.1 + 135177 0.74 0.467502
Target:  5'- uGGUGGGGguGguGGGGGCGGGGGu- -3'
miRNA:   3'- cCCAUCUUacUguCCCCCGCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 82001 0.67 0.829715
Target:  5'- aGGGUAaGAGg---AGGaGGGCGGGuGGCAg -3'
miRNA:   3'- -CCCAU-CUUacugUCC-CCCGCCC-CUGU- -5'
33633 3' -57.7 NC_007605.1 + 43740 0.67 0.828073
Target:  5'- gGGGUGGcaucgaaGGUGGCuuGGGGcuccggaGGUGGGGGCu -3'
miRNA:   3'- -CCCAUC-------UUACUG--UCCC-------CCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 156395 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 147188 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 156457 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 147250 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 151658 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 142451 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 150502 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 141295 0.68 0.749955
Target:  5'- cGGGUcucuGGAGgacgggGACggAGGGGGCcugaagcccGGGGACu -3'
miRNA:   3'- -CCCA----UCUUa-----CUG--UCCCCCG---------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 113277 0.7 0.69196
Target:  5'- uGGGgcccgAGcuuguguccAGUGAUGGGGaggcGGCGGGGACGc -3'
miRNA:   3'- -CCCa----UC---------UUACUGUCCC----CCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 55028 0.7 0.646237
Target:  5'- gGGGUGGAAUgucagaccaagGccgauugagccucccGCGGGGGGagGGGGGCAc -3'
miRNA:   3'- -CCCAUCUUA-----------C---------------UGUCCCCCg-CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 109494 0.72 0.523747
Target:  5'- uGGUGGAGcacAguGGGGGCGGGGcCGg -3'
miRNA:   3'- cCCAUCUUac-UguCCCCCGCCCCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.