miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 138043 0.68 0.792993
Target:  5'- cGGGggAGGAUcaggagcgaaggggGACGGGGaGGgGGGGAg- -3'
miRNA:   3'- -CCCa-UCUUA--------------CUGUCCC-CCgCCCCUgu -5'
33633 3' -57.7 NC_007605.1 + 151658 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 148589 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 144119 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 139382 0.68 0.786756
Target:  5'- gGGGcAGug-GACAGGGGcGggaGGGGGCu -3'
miRNA:   3'- -CCCaUCuuaCUGUCCCC-Cg--CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 150987 0.68 0.749013
Target:  5'- aGGUugauAGAAUGucgguaccacgccACGGGGGGCGGGcccGCAu -3'
miRNA:   3'- cCCA----UCUUAC-------------UGUCCCCCGCCCc--UGU- -5'
33633 3' -57.7 NC_007605.1 + 40146 0.75 0.389467
Target:  5'- cGGUgcaccuGGAA-GGCAGGGGG-GGGGGCAg -3'
miRNA:   3'- cCCA------UCUUaCUGUCCCCCgCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 57979 0.69 0.711573
Target:  5'- uGGUGGcGUGG-AGGGaGCGGGGACc -3'
miRNA:   3'- cCCAUCuUACUgUCCCcCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 59658 0.69 0.740487
Target:  5'- cGGGgAGGAUG-CGGaauGGCGGGGGCGu -3'
miRNA:   3'- -CCCaUCUUACuGUCcc-CCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 165716 0.69 0.740487
Target:  5'- gGGGUGGGcgGUGAuCAGGGaGaacaauucccCGGGGACAc -3'
miRNA:   3'- -CCCAUCU--UACU-GUCCCcC----------GCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 53860 0.69 0.730927
Target:  5'- aGGGgAGccugGACAGGGgcuuugGGCGGGGAgGa -3'
miRNA:   3'- -CCCaUCuua-CUGUCCC------CCGCCCCUgU- -5'
33633 3' -57.7 NC_007605.1 + 91142 0.66 0.889229
Target:  5'- uGGUcAGuucguccaAAUGGCcacgAGGGGGCGGGuGGCu -3'
miRNA:   3'- cCCA-UC--------UUACUG----UCCCCCGCCC-CUGu -5'
33633 3' -57.7 NC_007605.1 + 63101 0.66 0.887232
Target:  5'- gGGGUGGcAGUGGaGGGGGGagcuucagcuggucUGGGuGGCGg -3'
miRNA:   3'- -CCCAUC-UUACUgUCCCCC--------------GCCC-CUGU- -5'
33633 3' -57.7 NC_007605.1 + 78214 0.66 0.882497
Target:  5'- gGGGUGGGgcugGUGGCAuuuGGGGuuGGGGuaguCAc -3'
miRNA:   3'- -CCCAUCU----UACUGU---CCCCcgCCCCu---GU- -5'
33633 3' -57.7 NC_007605.1 + 78172 0.66 0.882497
Target:  5'- gGGGUGGGgcugGUGGCAuuuGGGGuuGGGGuaguCAc -3'
miRNA:   3'- -CCCAUCU----UACUGU---CCCCcgCCCCu---GU- -5'
33633 3' -57.7 NC_007605.1 + 59184 0.66 0.882497
Target:  5'- --------cGGCGGuGGGGCGGGGAgGa -3'
miRNA:   3'- cccaucuuaCUGUC-CCCCGCCCCUgU- -5'
33633 3' -57.7 NC_007605.1 + 48424 0.69 0.721287
Target:  5'- gGGGgagaaAGAcgGGCGGGGGcGUaGGGGAgGa -3'
miRNA:   3'- -CCCa----UCUuaCUGUCCCC-CG-CCCCUgU- -5'
33633 3' -57.7 NC_007605.1 + 57868 0.72 0.543081
Target:  5'- uGGUGGAG-GACagAGGGGGCGGcGGcCGg -3'
miRNA:   3'- cCCAUCUUaCUG--UCCCCCGCC-CCuGU- -5'
33633 3' -57.7 NC_007605.1 + 10612 0.72 0.533382
Target:  5'- aGGGgacaAGuGUGGCAGGuGGGCGggaaGGGGCAc -3'
miRNA:   3'- -CCCa---UCuUACUGUCC-CCCGC----CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 158592 0.74 0.458427
Target:  5'- cGGUAGGcugcaccgugGUGGCGGGGGGUGcGGGCu -3'
miRNA:   3'- cCCAUCU----------UACUGUCCCCCGCcCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.