miRNA display CGI


Results 101 - 119 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 59184 0.66 0.882497
Target:  5'- --------cGGCGGuGGGGCGGGGAgGa -3'
miRNA:   3'- cccaucuuaCUGUC-CCCCGCCCCUgU- -5'
33633 3' -57.7 NC_007605.1 + 78172 0.66 0.882497
Target:  5'- gGGGUGGGgcugGUGGCAuuuGGGGuuGGGGuaguCAc -3'
miRNA:   3'- -CCCAUCU----UACUGU---CCCCcgCCCCu---GU- -5'
33633 3' -57.7 NC_007605.1 + 78214 0.66 0.882497
Target:  5'- gGGGUGGGgcugGUGGCAuuuGGGGuuGGGGuaguCAc -3'
miRNA:   3'- -CCCAUCU----UACUGU---CCCCcgCCCCu---GU- -5'
33633 3' -57.7 NC_007605.1 + 63101 0.66 0.887232
Target:  5'- gGGGUGGcAGUGGaGGGGGGagcuucagcuggucUGGGuGGCGg -3'
miRNA:   3'- -CCCAUC-UUACUgUCCCCC--------------GCCC-CUGU- -5'
33633 3' -57.7 NC_007605.1 + 171587 0.67 0.837822
Target:  5'- gGGGgcaucgGGgGGGGuguuGGCGGGGGCAu -3'
miRNA:   3'- -CCCaucuuaCUgUCCC----CCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 157350 0.67 0.829715
Target:  5'- aGGGUGcccaggGACuucccGGGGGCcgugGGGGGCAc -3'
miRNA:   3'- -CCCAUcuua--CUGu----CCCCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 63611 0.67 0.829715
Target:  5'- gGGGUGGcGGUGGaguaugcuucguCGGGGGGCuGGGccuGCAg -3'
miRNA:   3'- -CCCAUC-UUACU------------GUCCCCCGcCCC---UGU- -5'
33633 3' -57.7 NC_007605.1 + 59658 0.69 0.740487
Target:  5'- cGGGgAGGAUG-CGGaauGGCGGGGGCGu -3'
miRNA:   3'- -CCCaUCUUACuGUCcc-CCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 150987 0.68 0.749013
Target:  5'- aGGUugauAGAAUGucgguaccacgccACGGGGGGCGGGcccGCAu -3'
miRNA:   3'- cCCA----UCUUAC-------------UGUCCCCCGCCCc--UGU- -5'
33633 3' -57.7 NC_007605.1 + 58932 0.68 0.759325
Target:  5'- aGGGcGGGAgGuCAGGGGGCGGccGGcCAg -3'
miRNA:   3'- -CCCaUCUUaCuGUCCCCCGCC--CCuGU- -5'
33633 3' -57.7 NC_007605.1 + 95904 0.68 0.786756
Target:  5'- aGGGgcaGGAggGGCAGgaGGGGCaggaGGGGCAg -3'
miRNA:   3'- -CCCa--UCUuaCUGUC--CCCCGc---CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 168774 0.68 0.795646
Target:  5'- aGGGaAGAGgaGAgGGGGGGUccucgaGGGGGCc -3'
miRNA:   3'- -CCCaUCUUa-CUgUCCCCCG------CCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 169610 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170147 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170669 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 171207 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 168533 0.67 0.821436
Target:  5'- aGGaAGAGUaaggGAaAGGGGGUGuGGGGCAa -3'
miRNA:   3'- cCCaUCUUA----CUgUCCCCCGC-CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 57791 0.67 0.829715
Target:  5'- aGGG-GGAAggcgagcugcUGAaGGGGGGCGauGGGGCGg -3'
miRNA:   3'- -CCCaUCUU----------ACUgUCCCCCGC--CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 91142 0.66 0.889229
Target:  5'- uGGUcAGuucguccaAAUGGCcacgAGGGGGCGGGuGGCu -3'
miRNA:   3'- cCCA-UC--------UUACUG----UCCCCCGCCC-CUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.