miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 3' -57.7 NC_007605.1 + 57791 0.67 0.829715
Target:  5'- aGGG-GGAAggcgagcugcUGAaGGGGGGCGauGGGGCGg -3'
miRNA:   3'- -CCCaUCUU----------ACUgUCCCCCGC--CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 157350 0.67 0.829715
Target:  5'- aGGGUGcccaggGACuucccGGGGGCcgugGGGGGCAc -3'
miRNA:   3'- -CCCAUcuua--CUGu----CCCCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 82001 0.67 0.829715
Target:  5'- aGGGUAaGAGg---AGGaGGGCGGGuGGCAg -3'
miRNA:   3'- -CCCAU-CUUacugUCC-CCCGCCC-CUGU- -5'
33633 3' -57.7 NC_007605.1 + 18363 0.67 0.829715
Target:  5'- aGGGgGGAGUGA-AGGGGGCGaGaaaGACGg -3'
miRNA:   3'- -CCCaUCUUACUgUCCCCCGC-Cc--CUGU- -5'
33633 3' -57.7 NC_007605.1 + 43740 0.67 0.828073
Target:  5'- gGGGUGGcaucgaaGGUGGCuuGGGGcuccggaGGUGGGGGCu -3'
miRNA:   3'- -CCCAUC-------UUACUG--UCCC-------CCGCCCCUGu -5'
33633 3' -57.7 NC_007605.1 + 168533 0.67 0.821436
Target:  5'- aGGaAGAGUaaggGAaAGGGGGUGuGGGGCAa -3'
miRNA:   3'- cCCaUCUUA----CUgUCCCCCGC-CCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 8816 0.67 0.821436
Target:  5'- cGG-AGAcgGGCAGcuacGuGGCGGGGGCGg -3'
miRNA:   3'- cCCaUCUuaCUGUCc---C-CCGCCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170147 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 170669 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 171207 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 169610 0.67 0.812141
Target:  5'- cGGUGGAuggcggcgGACguuccggggaucgGGGGGGUcgGGGGGCGc -3'
miRNA:   3'- cCCAUCUua------CUG-------------UCCCCCG--CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 159464 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 137981 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 141050 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 150257 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 156395 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 153326 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 159528 0.67 0.804394
Target:  5'- gGGGaGGAAcagGAgcgaAGGGGGaCGGGGAgGg -3'
miRNA:   3'- -CCCaUCUUa--CUg---UCCCCC-GCCCCUgU- -5'
33633 3' -57.7 NC_007605.1 + 144119 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5'
33633 3' -57.7 NC_007605.1 + 147188 0.67 0.804394
Target:  5'- gGGGUgcguggccaAGAggGGCAGGuacuGGGUgcagGGGGGCAg -3'
miRNA:   3'- -CCCA---------UCUuaCUGUCC----CCCG----CCCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.