Results 1 - 20 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33633 | 5' | -66.2 | NC_007605.1 | + | 87791 | 0.66 | 0.512666 |
Target: 5'- gGgGCCUCCuGCCGCgggGCCuccuGCCGcggGGCu -3' miRNA: 3'- gCgCGGGGGcCGGCG---CGGu---CGGU---UCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 48855 | 0.66 | 0.512666 |
Target: 5'- aCGCuGacaCCCUGGCCGCGCC--CCAGu- -3' miRNA: 3'- -GCG-Cg--GGGGCCGGCGCGGucGGUUcg -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 104614 | 0.66 | 0.512666 |
Target: 5'- aGC-CCUCCGcaGCCGCugaAGCCAGGCu -3' miRNA: 3'- gCGcGGGGGC--CGGCGcggUCGGUUCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 160706 | 0.66 | 0.512666 |
Target: 5'- gGCGUacaCCUGGCUGUacGCC-GCCGccAGCa -3' miRNA: 3'- gCGCGg--GGGCCGGCG--CGGuCGGU--UCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 68292 | 0.66 | 0.512666 |
Target: 5'- gGCGCuuagCCUCuGCCGCauuCCGGCCGuuAGCg -3' miRNA: 3'- gCGCG----GGGGcCGGCGc--GGUCGGU--UCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 61916 | 0.66 | 0.512666 |
Target: 5'- aGgGCCCCUgagGGCUccaaaaGCCggAGCCGGGCg -3' miRNA: 3'- gCgCGGGGG---CCGGcg----CGG--UCGGUUCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 159470 | 0.66 | 0.512666 |
Target: 5'- aGCGCgUCCGaGaggGCGCCggacgGGCCGGGCu -3' miRNA: 3'- gCGCGgGGGC-Cgg-CGCGG-----UCGGUUCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 115181 | 0.66 | 0.511762 |
Target: 5'- aGUGCCCCCGacCCGacccccacagugcCGCCAGuCCcuGCu -3' miRNA: 3'- gCGCGGGGGCc-GGC-------------GCGGUC-GGuuCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 59032 | 0.66 | 0.503652 |
Target: 5'- uGgGCCUgguugCacgaGGCCGUGCCuaggaugcggagGGCCGAGCc -3' miRNA: 3'- gCgCGGG-----Gg---CCGGCGCGG------------UCGGUUCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 134155 | 0.66 | 0.503652 |
Target: 5'- -cCGCCaaCCUGGCCGaGgCGGCCAcccGGCg -3' miRNA: 3'- gcGCGG--GGGCCGGCgCgGUCGGU---UCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 140717 | 0.66 | 0.500961 |
Target: 5'- cCGgGCCaCCCGGCgGaGCCAGgCCccuccugagacagcAGGCu -3' miRNA: 3'- -GCgCGG-GGGCCGgCgCGGUC-GG--------------UUCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 32996 | 0.66 | 0.494707 |
Target: 5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3' miRNA: 3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 45452 | 0.66 | 0.494707 |
Target: 5'- -uCGCUCuuGGCCGgGCCGGgcccCCGGGg -3' miRNA: 3'- gcGCGGGggCCGGCgCGGUC----GGUUCg -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 37389 | 0.66 | 0.494707 |
Target: 5'- gGCGCCCggcauaCCaGCUGaCGCCAuGgCAGGCu -3' miRNA: 3'- gCGCGGG------GGcCGGC-GCGGU-CgGUUCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 17652 | 0.66 | 0.494707 |
Target: 5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3' miRNA: 3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 20721 | 0.66 | 0.494707 |
Target: 5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3' miRNA: 3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 26859 | 0.66 | 0.494707 |
Target: 5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3' miRNA: 3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 123296 | 0.66 | 0.494707 |
Target: 5'- uGCuGCCCCCgGGCCucuuggaauGCaGCUggGGCCAGGg -3' miRNA: 3'- gCG-CGGGGG-CCGG---------CG-CGG--UCGGUUCg -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 5017 | 0.66 | 0.494707 |
Target: 5'- -cUGCCCUggcaGGCCGUGCCA-CCGuGGCg -3' miRNA: 3'- gcGCGGGGg---CCGGCGCGGUcGGU-UCG- -5' |
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33633 | 5' | -66.2 | NC_007605.1 | + | 14583 | 0.66 | 0.494707 |
Target: 5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3' miRNA: 3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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