miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 5' -66.2 NC_007605.1 + 143015 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 142811 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 134681 0.66 0.47704
Target:  5'- gGCcUCCCCGGUgGCcCCAaGCUGAGCc -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGU-CGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 141894 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 141385 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 14583 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33633 5' -66.2 NC_007605.1 + 142302 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 106379 0.66 0.485836
Target:  5'- --aGCCCCCcGCUGCGCCugAGCUcccGCu -3'
miRNA:   3'- gcgCGGGGGcCGGCGCGG--UCGGuu-CG- -5'
33633 5' -66.2 NC_007605.1 + 140977 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 141283 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 94897 0.66 0.47704
Target:  5'- -cUGCCUCCGGCCccauccCGCgAGCCccAGCa -3'
miRNA:   3'- gcGCGGGGGCCGGc-----GCGgUCGGu-UCG- -5'
33633 5' -66.2 NC_007605.1 + 23790 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33633 5' -66.2 NC_007605.1 + 5017 0.66 0.494707
Target:  5'- -cUGCCCUggcaGGCCGUGCCA-CCGuGGCg -3'
miRNA:   3'- gcGCGGGGg---CCGGCGCGGUcGGU-UCG- -5'
33633 5' -66.2 NC_007605.1 + 163456 0.66 0.476165
Target:  5'- uGC-CCaCCCGucggacgcgcagcGCCuGCGCCAGCCcGGUg -3'
miRNA:   3'- gCGcGG-GGGC-------------CGG-CGCGGUCGGuUCG- -5'
33633 5' -66.2 NC_007605.1 + 142913 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 81452 0.66 0.480549
Target:  5'- gGCGUgugcaccaguacccgCCCCGGCUGgGCCuauuguccGGCCcuggGAGCc -3'
miRNA:   3'- gCGCG---------------GGGGCCGGCgCGG--------UCGG----UUCG- -5'
33633 5' -66.2 NC_007605.1 + 141181 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 73752 0.66 0.485836
Target:  5'- gGCGCCCCCuGUagGCGUCuaucguccuuGCCAcAGCg -3'
miRNA:   3'- gCGCGGGGGcCGg-CGCGGu---------CGGU-UCG- -5'
33633 5' -66.2 NC_007605.1 + 141996 0.66 0.474417
Target:  5'- cCGCuGCCCCgcuccggcggggggUGGCCG-GCugCAGCCGGGUc -3'
miRNA:   3'- -GCG-CGGGG--------------GCCGGCgCG--GUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 20721 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.